Variant report

Variant	rs61625041
Chromosome Location	chr1:224875184-224875185
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12239521	1.00[ASN][1000 genomes]
rs16851979	1.00[ASN][1000 genomes]
rs56879180	0.91[ASN][1000 genomes]
rs57247814	0.91[ASN][1000 genomes]
rs58011163	0.91[ASN][1000 genomes]
rs58316565	1.00[ASN][1000 genomes]
rs58632343	0.91[ASN][1000 genomes]
rs58793647	1.00[ASN][1000 genomes]
rs58973007	1.00[ASN][1000 genomes]
rs59093574	1.00[ASN][1000 genomes]
rs59151274	1.00[ASN][1000 genomes]
rs60017318	0.91[ASN][1000 genomes]
rs60936981	0.91[ASN][1000 genomes]
rs61631299	0.91[ASN][1000 genomes]
rs6426151	1.00[ASN][1000 genomes]
rs6661687	1.00[ASN][1000 genomes]
rs6692860	1.00[ASN][1000 genomes]
rs74146218	0.91[ASN][1000 genomes]
rs7513442	1.00[ASN][1000 genomes]
rs7545558	1.00[ASN][1000 genomes]
rs7555388	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224832200-224884400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:224861200-224876800	Weak transcription	Ovary	ovary
3	chr1:224862400-224902000	Weak transcription	Pancreas	Pancrea
4	chr1:224864000-224876200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr1:224868400-224875200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:224869800-224877200	Weak transcription	Dnd41	blood
7	chr1:224871400-224876400	Strong transcription	NHDF-Ad	bronchial
8	chr1:224871800-224884600	Weak transcription	Fetal Brain Female	brain
9	chr1:224872800-224876000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:224873000-224876800	Weak transcription	Fetal Brain Male	brain
11	chr1:224873000-224884800	Weak transcription	NHLF	lung
12	chr1:224873200-224877000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:224873400-224884200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr1:224874400-224876200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:224874600-224875600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:224875000-224881600	Weak transcription	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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