Variant report

Variant	rs12239521
Chromosome Location	chr1:224890399-224890400
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:224885130..224887925-chr1:224889858..224891472,2	MCF-7	breast:
2	chr1:224882945..224885447-chr1:224889455..224891684,2	K562	blood:
3	chr1:224884331..224887289-chr1:224890034..224891821,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13374273	0.82[AFR][1000 genomes]
rs16851979	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56879180	0.91[ASN][1000 genomes]
rs57247814	0.91[ASN][1000 genomes]
rs58011163	0.91[ASN][1000 genomes]
rs58316565	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58632343	0.91[ASN][1000 genomes]
rs58793647	1.00[ASN][1000 genomes]
rs58973007	1.00[ASN][1000 genomes]
rs59093574	1.00[ASN][1000 genomes]
rs59151274	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60017318	0.91[ASN][1000 genomes]
rs60936981	0.91[ASN][1000 genomes]
rs61625041	1.00[ASN][1000 genomes]
rs61631299	0.91[ASN][1000 genomes]
rs6426149	0.96[AFR][1000 genomes]
rs6426151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6661687	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6679959	0.96[AFR][1000 genomes]
rs6690547	0.83[AFR][1000 genomes]
rs6692860	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74146218	0.91[ASN][1000 genomes]
rs7513442	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7545558	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554221	0.96[AFR][1000 genomes]
rs7555388	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9729870	1.00[AFR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224862400-224902000	Weak transcription	Pancreas	Pancrea
2	chr1:224877600-224891600	Weak transcription	Dnd41	blood
3	chr1:224881400-224895400	Weak transcription	Ovary	ovary
4	chr1:224885000-224920200	Weak transcription	Right Atrium	heart
5	chr1:224885200-224891200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:224885600-224895200	Weak transcription	NH-A	brain
7	chr1:224885800-224891200	Weak transcription	NHLF	lung
8	chr1:224885800-224891400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:224885800-224895200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:224886200-224891600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:224886200-224891600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr1:224888400-224894200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:224888800-224891400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:224888800-224895600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:224889000-224892600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:224889200-224890400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr1:224889200-224890400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr1:224889200-224890800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr1:224889200-224891400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr1:224889200-224891600	Weak transcription	NHDF-Ad	bronchial
21	chr1:224889400-224891600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr1:224889800-224895600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr1:224890000-224891200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:224890200-224890400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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