Variant report

Variant	rs6679959
Chromosome Location	chr1:224870704-224870705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:224869255..224871044-chr1:224877081..224878780,2	K562	blood:
2	chr1:224869544..224871565-chr1:224877280..224879133,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12239521	0.96[AFR][1000 genomes]
rs13374584	1.00[AMR][1000 genomes]
rs1499284	1.00[AMR][1000 genomes]
rs16849419	1.00[AMR][1000 genomes]
rs16849547	1.00[AMR][1000 genomes]
rs16851979	0.89[YRI][hapmap];1.00[AFR][1000 genomes]
rs56081029	1.00[AMR][1000 genomes]
rs6426149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6426151	0.89[YRI][hapmap];0.96[AFR][1000 genomes]
rs6661687	0.89[YRI][hapmap];1.00[AFR][1000 genomes]
rs6676850	1.00[AMR][1000 genomes]
rs6685335	0.89[YRI][hapmap]
rs6690547	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6692860	0.89[YRI][hapmap];1.00[AFR][1000 genomes]
rs6695061	0.89[YRI][hapmap]
rs74146377	1.00[AMR][1000 genomes]
rs74146381	1.00[AMR][1000 genomes]
rs74146382	1.00[AMR][1000 genomes]
rs74146383	1.00[AMR][1000 genomes]
rs74146386	1.00[AMR][1000 genomes]
rs7513442	0.89[YRI][hapmap];1.00[AFR][1000 genomes]
rs7545558	0.89[YRI][hapmap];1.00[AFR][1000 genomes]
rs7554221	0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7555388	0.88[AFR][1000 genomes]
rs9661938	1.00[AMR][1000 genomes]
rs9729870	0.88[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224832200-224884400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:224833200-224874400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:224858400-224871800	Weak transcription	NHLF	lung
4	chr1:224858400-224874200	Weak transcription	NH-A	brain
5	chr1:224859600-224871400	Weak transcription	NHDF-Ad	bronchial
6	chr1:224861200-224876800	Weak transcription	Ovary	ovary
7	chr1:224862400-224902000	Weak transcription	Pancreas	Pancrea
8	chr1:224864000-224876200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr1:224864600-224871600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:224867800-224872400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:224868000-224871800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:224868000-224874000	Weak transcription	Gastric	stomach
13	chr1:224868400-224875200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:224869400-224872600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr1:224869800-224871800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:224869800-224871800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:224869800-224877200	Weak transcription	Dnd41	blood
18	chr1:224870200-224872600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr1:224870400-224872000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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