Variant report

Variant	rs13374584
Chromosome Location	chr1:224838381-224838382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10915712	1.00[EUR][1000 genomes]
rs10915713	1.00[EUR][1000 genomes]
rs1499284	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2794805	1.00[EUR][1000 genomes]
rs55712053	1.00[EUR][1000 genomes]
rs56081029	1.00[AMR][1000 genomes]
rs58814229	1.00[EUR][1000 genomes]
rs59034185	1.00[EUR][1000 genomes]
rs60846144	1.00[EUR][1000 genomes]
rs61155217	1.00[EUR][1000 genomes]
rs6426149	1.00[AMR][1000 genomes]
rs6658918	1.00[EUR][1000 genomes]
rs6659109	1.00[EUR][1000 genomes]
rs6676850	1.00[AMR][1000 genomes]
rs6679959	1.00[AMR][1000 genomes]
rs6687424	1.00[EUR][1000 genomes]
rs6690547	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6691181	1.00[EUR][1000 genomes]
rs6702972	1.00[EUR][1000 genomes]
rs73127901	1.00[EUR][1000 genomes]
rs73129810	1.00[EUR][1000 genomes]
rs73129812	1.00[EUR][1000 genomes]
rs73133345	1.00[EUR][1000 genomes]
rs74146264	1.00[EUR][1000 genomes]
rs74146372	1.00[EUR][1000 genomes]
rs74146374	1.00[EUR][1000 genomes]
rs74146377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74146381	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74146382	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74146383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74146384	1.00[EUR][1000 genomes]
rs74146386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74146389	1.00[EUR][1000 genomes]
rs7512165	1.00[EUR][1000 genomes]
rs7554221	1.00[AMR][1000 genomes]
rs9661679	1.00[EUR][1000 genomes]
rs9661938	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9729870	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224820400-224840000	Weak transcription	Right Atrium	heart
2	chr1:224826000-224839200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:224827000-224839800	Weak transcription	HSMM	muscle
4	chr1:224828800-224853400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:224832200-224839800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:224832200-224884400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:224832800-224869000	Weak transcription	Dnd41	blood
8	chr1:224833200-224874400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:224833400-224840600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:224835600-224839800	Weak transcription	Pancreas	Pancrea
11	chr1:224836000-224840200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:224836800-224838800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:224837000-224838400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:224837400-224838400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:224837600-224838600	Enhancers	NHDF-Ad	bronchial
16	chr1:224837600-224840000	Weak transcription	Spleen	Spleen
17	chr1:224837600-224840200	Enhancers	Fetal Brain Male	brain
18	chr1:224837800-224838400	Enhancers	Psoas Muscle	Psoas
19	chr1:224837800-224838600	Enhancers	NHLF	lung
20	chr1:224837800-224838800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr1:224837800-224838800	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr1:224837800-224838800	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr1:224837800-224838800	Enhancers	Fetal Lung	lung
24	chr1:224838000-224838400	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr1:224838000-224838600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr1:224838000-224838600	Enhancers	Fetal Brain Female	brain
27	chr1:224838200-224838400	Enhancers	Left Ventricle	heart
28	chr1:224838200-224838400	Flanking Active TSS	Ovary	ovary
29	chr1:224838200-224838600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr1:224838200-224838600	Enhancers	Fetal Stomach	stomach
31	chr1:224838200-224839000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr1:224838200-224839800	Weak transcription	NH-A	brain

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