Variant report

Variant	rs6702972
Chromosome Location	chr1:224912324-224912325
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:224910297..224912551-chr1:224913621..224915881,2	K562	blood:
2	chr1:224912065..224916127-chr1:224919460..224922896,4	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10915712	1.00[EUR][1000 genomes]
rs10915713	1.00[EUR][1000 genomes]
rs12073050	1.00[MEX][hapmap]
rs13374584	1.00[EUR][1000 genomes]
rs1499284	1.00[EUR][1000 genomes]
rs16849419	1.00[EUR][1000 genomes]
rs16849547	1.00[EUR][1000 genomes]
rs2794805	1.00[EUR][1000 genomes]
rs55712053	1.00[EUR][1000 genomes]
rs57719973	1.00[AMR][1000 genomes]
rs58814229	1.00[EUR][1000 genomes]
rs59034185	1.00[EUR][1000 genomes]
rs59777302	1.00[EUR][1000 genomes]
rs60846144	1.00[EUR][1000 genomes]
rs61155217	1.00[EUR][1000 genomes]
rs6658918	1.00[EUR][1000 genomes]
rs6659109	1.00[EUR][1000 genomes]
rs6687424	1.00[EUR][1000 genomes]
rs6691181	1.00[EUR][1000 genomes]
rs73127901	1.00[EUR][1000 genomes]
rs73129810	1.00[EUR][1000 genomes]
rs73129812	1.00[EUR][1000 genomes]
rs73129837	1.00[EUR][1000 genomes]
rs73129838	1.00[EUR][1000 genomes]
rs73129850	1.00[EUR][1000 genomes]
rs73129853	1.00[EUR][1000 genomes]
rs73129855	1.00[EUR][1000 genomes]
rs73129861	1.00[EUR][1000 genomes]
rs73129867	1.00[EUR][1000 genomes]
rs73129870	1.00[EUR][1000 genomes]
rs73133345	1.00[EUR][1000 genomes]
rs74146264	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74146265	1.00[AMR][1000 genomes]
rs74146372	1.00[EUR][1000 genomes]
rs74146374	1.00[EUR][1000 genomes]
rs74146377	1.00[EUR][1000 genomes]
rs74146381	1.00[EUR][1000 genomes]
rs74146382	1.00[EUR][1000 genomes]
rs74146383	1.00[EUR][1000 genomes]
rs74146384	1.00[EUR][1000 genomes]
rs74146386	1.00[EUR][1000 genomes]
rs74146389	1.00[EUR][1000 genomes]
rs7512165	1.00[EUR][1000 genomes]
rs7522229	1.00[EUR][1000 genomes]
rs9661679	1.00[EUR][1000 genomes]
rs9661938	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524125	chr1:224902054-225021860	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224885000-224920200	Weak transcription	Right Atrium	heart
2	chr1:224896200-224914000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:224896400-224913800	Weak transcription	NHLF	lung
4	chr1:224896400-224914000	Weak transcription	NH-A	brain
5	chr1:224903000-224914000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:224907000-224912400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:224907000-224920200	Weak transcription	Gastric	stomach
8	chr1:224908000-224913200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:224909200-224920200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:224909600-224913200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:224910000-224912600	Enhancers	NHDF-Ad	bronchial
12	chr1:224910400-224913200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:224910400-224920200	Weak transcription	Fetal Thymus	thymus
14	chr1:224910800-224912400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:224910800-224913000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr1:224910800-224913000	Weak transcription	Dnd41	blood
17	chr1:224911000-224914200	Weak transcription	Adipose Nuclei	Adipose
18	chr1:224911200-224912400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr1:224911200-224913800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:224911200-224920200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr1:224911400-224913000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr1:224911600-224913000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:224912200-224913000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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