Variant report

Variant	rs73129861
Chromosome Location	chr1:225111604-225111605
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225110317..225111909-chr1:225113611..225115449,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10915712	1.00[EUR][1000 genomes]
rs10915713	1.00[EUR][1000 genomes]
rs58883363	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59263273	1.00[EUR][1000 genomes]
rs59279645	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59777302	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59930091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60002937	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60489231	1.00[EUR][1000 genomes]
rs60846144	1.00[EUR][1000 genomes]
rs61564365	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61732752	0.85[AFR][1000 genomes]
rs61745064	1.00[EUR][1000 genomes]
rs6702972	1.00[EUR][1000 genomes]
rs73127901	1.00[EUR][1000 genomes]
rs73129810	1.00[EUR][1000 genomes]
rs73129812	1.00[EUR][1000 genomes]
rs73129837	1.00[EUR][1000 genomes]
rs73129838	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73129850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73129853	1.00[EUR][1000 genomes]
rs73129855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73129867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73129870	1.00[EUR][1000 genomes]
rs73129894	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73129898	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73129900	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73131704	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73133542	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73133544	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73133554	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73133577	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73133578	1.00[EUR][1000 genomes]
rs73133591	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74146264	1.00[EUR][1000 genomes]
rs7415021	0.85[AFR][1000 genomes]
rs7522229	1.00[EUR][1000 genomes]
rs7554589	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757773	chr1:225087924-225253274	Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv2759001	chr1:225087924-225253274	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225110000-225111800	Enhancers	Ovary	ovary
2	chr1:225110200-225117000	Weak transcription	Gastric	stomach
3	chr1:225110400-225112800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:225110400-225117000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:225110400-225117000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:225110400-225117000	Weak transcription	Pancreas	Pancrea
7	chr1:225110800-225116200	Weak transcription	Liver	Liver
8	chr1:225111000-225112400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:225111600-225112400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:225111600-225117000	Weak transcription	NH-A	brain

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