Variant report

Variant	rs9729870
Chromosome Location	chr1:224886552-224886553
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:224862745..224864541-chr1:224886304..224888766,2	K562	blood:
2	chr1:224885130..224887925-chr1:224889858..224891472,2	MCF-7	breast:
3	chr1:224884331..224887289-chr1:224890034..224891821,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12239521	1.00[AFR][1000 genomes]
rs13374273	0.80[YRI][hapmap];0.82[AFR][1000 genomes]
rs13374584	1.00[AMR][1000 genomes]
rs1499284	1.00[AMR][1000 genomes]
rs16849419	1.00[AMR][1000 genomes]
rs16849547	1.00[AMR][1000 genomes]
rs16851979	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs16852009	0.80[YRI][hapmap]
rs16852027	0.80[YRI][hapmap]
rs16852032	0.80[YRI][hapmap]
rs56081029	1.00[AMR][1000 genomes]
rs59151274	0.82[AFR][1000 genomes]
rs6426149	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6426151	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6661687	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs6676850	1.00[AMR][1000 genomes]
rs6679959	0.88[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6685335	1.00[YRI][hapmap]
rs6685547	0.80[YRI][hapmap]
rs6690547	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6692860	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs6694298	0.80[YRI][hapmap]
rs6695061	1.00[YRI][hapmap]
rs74146377	1.00[AMR][1000 genomes]
rs74146381	1.00[AMR][1000 genomes]
rs74146382	1.00[AMR][1000 genomes]
rs74146383	1.00[AMR][1000 genomes]
rs74146386	1.00[AMR][1000 genomes]
rs7513442	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs7545558	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs7554221	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7555388	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs879363	0.80[YRI][hapmap]
rs9661938	1.00[AMR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224862400-224902000	Weak transcription	Pancreas	Pancrea
2	chr1:224875600-224888400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:224877600-224891600	Weak transcription	Dnd41	blood
4	chr1:224881400-224895400	Weak transcription	Ovary	ovary
5	chr1:224884000-224887000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr1:224884200-224887400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:224884800-224886800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr1:224885000-224886600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:224885000-224920200	Weak transcription	Right Atrium	heart
10	chr1:224885200-224891200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:224885600-224895200	Weak transcription	NH-A	brain
12	chr1:224885800-224886600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:224885800-224891200	Weak transcription	NHLF	lung
14	chr1:224885800-224891400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr1:224885800-224895200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr1:224886000-224888000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:224886000-224890200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr1:224886200-224887000	Strong transcription	NHDF-Ad	bronchial
19	chr1:224886200-224888400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr1:224886200-224891600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:224886200-224891600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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