Variant report

Variant	rs61651457
Chromosome Location	chr15:92200204-92200205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs5005976	1.00[EUR][1000 genomes]
rs60107557	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60155256	1.00[EUR][1000 genomes]
rs60940683	1.00[EUR][1000 genomes]
rs7177898	1.00[EUR][1000 genomes]
rs74029618	1.00[EUR][1000 genomes]
rs74029619	1.00[EUR][1000 genomes]
rs74029620	1.00[EUR][1000 genomes]
rs74029660	1.00[EUR][1000 genomes]
rs74029664	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1664	chr15:92191626-92236408	Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3339630	chr15:92199248-92200246	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92199000-92203200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr15:92199200-92203000	Weak transcription	Dnd41	blood
3	chr15:92199800-92200600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:92200000-92200400	Enhancers	Brain Substantia Nigra	brain
5	chr15:92200000-92202200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:92200200-92200600	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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