Variant report

Variant	rs74029620
Chromosome Location	chr15:92235282-92235283
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs34787567	1.00[EUR][1000 genomes]
rs4129509	1.00[EUR][1000 genomes]
rs4129510	1.00[EUR][1000 genomes]
rs5005976	1.00[EUR][1000 genomes]
rs56843948	1.00[EUR][1000 genomes]
rs58074810	1.00[EUR][1000 genomes]
rs60107557	1.00[EUR][1000 genomes]
rs60155256	1.00[EUR][1000 genomes]
rs60940683	1.00[EUR][1000 genomes]
rs61651457	1.00[EUR][1000 genomes]
rs7167553	1.00[EUR][1000 genomes]
rs7177898	1.00[EUR][1000 genomes]
rs7181078	1.00[EUR][1000 genomes]
rs73547363	1.00[EUR][1000 genomes]
rs74029618	1.00[EUR][1000 genomes]
rs74029619	1.00[EUR][1000 genomes]
rs74029660	1.00[EUR][1000 genomes]
rs74029664	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1664	chr15:92191626-92236408	Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92233000-92237400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr15:92233000-92237600	Weak transcription	Brain Substantia Nigra	brain
3	chr15:92233000-92237800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr15:92234000-92235800	Weak transcription	Fetal Brain Male	brain
5	chr15:92235000-92237600	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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