Variant report

Variant	rs7181078
Chromosome Location	chr15:92399103-92399104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:92249368..92250236-chr15:92398731..92399438,2	MCF-7	breast:
2	chr15:92399051..92399573-chr15:92516840..92517520,2	MCF-7	breast:
3	chr15:92395543..92397547-chr15:92397890..92399394,2	K562	blood:
4	chr15:92399066..92399852-chr15:92525323..92526129,3	MCF-7	breast:
5	chr15:92398900..92399766-chr15:92625069..92626058,4	MCF-7	breast:
6	chr15:92398412..92399161-chr15:92620330..92621178,2	MCF-7	breast:
7	chr15:92397715..92399239-chr15:92515184..92517679,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176463	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs34787567	1.00[EUR][1000 genomes]
rs4129509	0.88[ASW][hapmap];1.00[EUR][1000 genomes]
rs4129510	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs5005976	1.00[EUR][1000 genomes]
rs56843948	1.00[EUR][1000 genomes]
rs58074810	1.00[EUR][1000 genomes]
rs60940683	1.00[EUR][1000 genomes]
rs7167553	1.00[EUR][1000 genomes]
rs7177898	1.00[EUR][1000 genomes]
rs73547363	1.00[EUR][1000 genomes]
rs74029618	1.00[EUR][1000 genomes]
rs74029619	1.00[EUR][1000 genomes]
rs74029620	1.00[EUR][1000 genomes]
rs74029660	1.00[EUR][1000 genomes]
rs74029664	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92396000-92399200	Active TSS	Brain Cingulate Gyrus	brain
2	chr15:92396000-92399200	Active TSS	Ovary	ovary
3	chr15:92396000-92399200	Active TSS	Right Ventricle	heart
4	chr15:92396000-92399400	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr15:92396000-92399400	Active TSS	Brain Substantia Nigra	brain
6	chr15:92396000-92399400	Active TSS	Right Atrium	heart
7	chr15:92396000-92399800	Active TSS	Brain Angular Gyrus	brain
8	chr15:92396000-92399800	Active TSS	Brain Anterior Caudate	brain
9	chr15:92396200-92400400	Active TSS	Fetal Brain Female	brain
10	chr15:92396400-92399200	Active TSS	Brain Hippocampus Middle	brain
11	chr15:92397600-92399600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
12	chr15:92397600-92400200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr15:92397600-92401200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr15:92397800-92399400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr15:92397800-92399400	Flanking Active TSS	NHEK	skin
16	chr15:92397800-92399600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:92397800-92399800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:92398000-92399200	Active TSS	Adipose Nuclei	Adipose
19	chr15:92398000-92399600	Weak transcription	Pancreas	Pancrea
20	chr15:92398000-92399800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr15:92398000-92401200	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr15:92398000-92408000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:92398000-92408400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr15:92398000-92408800	Weak transcription	Colon Smooth Muscle	Colon
25	chr15:92398000-92410000	Weak transcription	Gastric	stomach
26	chr15:92398200-92399200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr15:92398200-92399400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr15:92398200-92399400	Weak transcription	Esophagus	oesophagus
29	chr15:92398200-92399400	Active TSS	Rectal Mucosa Donor 29	rectum
30	chr15:92398200-92399400	Weak transcription	Spleen	Spleen
31	chr15:92398200-92399800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr15:92398200-92400400	Weak transcription	Psoas Muscle	Psoas
33	chr15:92398200-92401400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:92398200-92401400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr15:92398200-92406400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr15:92398400-92399200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr15:92398400-92400200	Weak transcription	Small Intestine	intestine
38	chr15:92398400-92400600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
39	chr15:92398400-92402200	Enhancers	Fetal Brain Male	brain
40	chr15:92398400-92405000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:92398600-92399200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
42	chr15:92398600-92399200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
43	chr15:92398600-92399400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr15:92398600-92399400	Weak transcription	Aorta	Aorta
45	chr15:92398600-92399400	Weak transcription	Colonic Mucosa	Colon
46	chr15:92398600-92399400	Bivalent Enhancer	Duodenum Mucosa	Duodenum
47	chr15:92398600-92399400	Enhancers	A549	lung
48	chr15:92398600-92399400	Enhancers	Hela-S3	cervix
49	chr15:92398600-92399600	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr15:92398600-92399600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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