Variant report

Variant	rs7167553
Chromosome Location	chr15:92404182-92404183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs28639605	0.81[ASN][1000 genomes]
rs34787567	1.00[EUR][1000 genomes]
rs4129509	1.00[EUR][1000 genomes]
rs4129510	1.00[EUR][1000 genomes]
rs5005976	1.00[EUR][1000 genomes]
rs56843948	1.00[EUR][1000 genomes]
rs58074810	1.00[EUR][1000 genomes]
rs60940683	1.00[EUR][1000 genomes]
rs7177898	1.00[EUR][1000 genomes]
rs7181078	1.00[EUR][1000 genomes]
rs73547363	1.00[EUR][1000 genomes]
rs74029618	1.00[EUR][1000 genomes]
rs74029619	1.00[EUR][1000 genomes]
rs74029620	1.00[EUR][1000 genomes]
rs74029660	1.00[EUR][1000 genomes]
rs74029664	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92398000-92408000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:92398000-92408400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr15:92398000-92408800	Weak transcription	Colon Smooth Muscle	Colon
4	chr15:92398000-92410000	Weak transcription	Gastric	stomach
5	chr15:92398200-92406400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:92398400-92405000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:92398800-92413400	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr15:92399000-92407200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:92399400-92408200	Weak transcription	A549	lung
10	chr15:92399400-92408800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:92399800-92410600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr15:92400000-92406200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr15:92400000-92406400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:92400000-92406400	Weak transcription	Stomach Mucosa	stomach
15	chr15:92400000-92408000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr15:92400000-92408400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr15:92400000-92408800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr15:92400000-92410200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr15:92400000-92410200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr15:92400000-92410200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr15:92400200-92404600	Enhancers	Brain Cingulate Gyrus	brain
22	chr15:92400200-92406400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr15:92400200-92409400	Weak transcription	Colonic Mucosa	Colon
24	chr15:92400200-92409400	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr15:92400400-92410000	Enhancers	Brain Hippocampus Middle	brain
26	chr15:92400600-92407200	Weak transcription	Aorta	Aorta
27	chr15:92400800-92406000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr15:92400800-92409400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr15:92401000-92404600	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr15:92401000-92406400	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr15:92401000-92406400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr15:92401000-92410800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr15:92401000-92412200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr15:92401000-92412200	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr15:92401000-92415400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr15:92401200-92406000	Weak transcription	Fetal Brain Female	brain
37	chr15:92401200-92406400	Weak transcription	Hela-S3	cervix
38	chr15:92401200-92406800	Weak transcription	Small Intestine	intestine
39	chr15:92401200-92415000	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr15:92401400-92404400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr15:92401600-92408200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr15:92402200-92404200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr15:92402400-92406200	Enhancers	Primary T cells from cord blood	blood
44	chr15:92402400-92408000	Weak transcription	Ovary	ovary
45	chr15:92402600-92411200	Enhancers	Primary monocytes fromperipheralblood	blood
46	chr15:92403000-92405000	Enhancers	Brain Substantia Nigra	brain
47	chr15:92403000-92413200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr15:92403200-92404200	Enhancers	Primary hematopoietic stem cells short term culture	blood
49	chr15:92403200-92404600	Enhancers	Right Atrium	heart
50	chr15:92403200-92404800	Enhancers	Left Ventricle	heart

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