Variant report
| Variant | rs60940683 |
|---|---|
| Chromosome Location | chr15:92243977-92243978 |
| allele | A/C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:120916194..120917980-chr15:92241983..92244557,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs34787567 | 1.00[EUR][1000 genomes] |
| rs4129509 | 1.00[EUR][1000 genomes] |
| rs4129510 | 1.00[EUR][1000 genomes] |
| rs5005976 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56843948 | 1.00[EUR][1000 genomes] |
| rs58074810 | 1.00[EUR][1000 genomes] |
| rs60107557 | 1.00[EUR][1000 genomes] |
| rs60155256 | 1.00[EUR][1000 genomes] |
| rs61651457 | 1.00[EUR][1000 genomes] |
| rs7167553 | 1.00[EUR][1000 genomes] |
| rs7177898 | 1.00[EUR][1000 genomes] |
| rs7181078 | 1.00[EUR][1000 genomes] |
| rs73547363 | 1.00[EUR][1000 genomes] |
| rs74029618 | 1.00[EUR][1000 genomes] |
| rs74029619 | 1.00[EUR][1000 genomes] |
| rs74029620 | 1.00[EUR][1000 genomes] |
| rs74029660 | 1.00[EUR][1000 genomes] |
| rs74029664 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048635 | chr15:92073294-92557339 | Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv570449 | chr15:92237795-92334756 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:92238200-92249600 | Weak transcription | Right Atrium | heart |
