Variant report

Variant	rs61680362
Chromosome Location	chr7:112621897-112621898
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10233800	0.89[EUR][1000 genomes]
rs10236439	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10236707	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10237085	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10240478	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10241725	0.87[AMR][1000 genomes]
rs10247997	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10252311	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10259048	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10263057	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10269437	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10277476	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10279386	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10280036	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10280117	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10441329	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28378392	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28542840	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28589798	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28634829	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28832579	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs500280	0.89[EUR][1000 genomes]
rs59569539	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73718120	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73718121	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73718123	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73718124	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73718131	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73718132	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73718133	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73718138	0.87[AMR][1000 genomes]
rs73718141	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9648966	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758131	chr7:112492127-112768628	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2759556	chr7:112492127-112768628	Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3355135	chr7:112616979-113134651	Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv970572	chr7:112617484-112621933	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a
5	nsv435847	chr7:112618576-113134022	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv3430638	chr7:112620663-113134403	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv3442221	chr7:112620665-113134971	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112594200-112630400	Weak transcription	Left Ventricle	heart
2	chr7:112621800-112622000	Enhancers	Primary B cells from cord blood	blood

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