Variant report

Variant	rs61683759
Chromosome Location	chr13:48867676-48867677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:48867552..48869421-chr13:48873308..48875725,3	MCF-7	breast:
2	chr13:48864151..48871869-chr13:48872289..48878751,15	K562	blood:
3	chr13:48806489..48808731-chr13:48866929..48869050,2	MCF-7	breast:
4	chr13:48864151..48868516-chr13:48876276..48879095,3	K562	blood:

Variant related genes	Relation type
ENSG00000139687	Chromatin interaction
ENSG00000136156	Chromatin interaction
ENSG00000231473	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1002865	1.00[EUR][1000 genomes]
rs34692420	1.00[EUR][1000 genomes]
rs56835880	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56955865	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60372626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73485077	1.00[EUR][1000 genomes]
rs73485079	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73487044	1.00[ASN][1000 genomes]
rs73487048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73487051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73487055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73487056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73487058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7983535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7986777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7993670	1.00[EUR][1000 genomes]
rs7996717	1.00[EUR][1000 genomes]
rs7999809	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8002352	1.00[EUR][1000 genomes]
rs9332285	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9332304	1.00[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48844400-48877200	Weak transcription	Aorta	Aorta
2	chr13:48863000-48876400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:48865600-48868000	Enhancers	Stomach Mucosa	stomach
4	chr13:48865800-48867800	Enhancers	Liver	Liver
5	chr13:48865800-48867800	Enhancers	Duodenum Mucosa	Duodenum
6	chr13:48865800-48867800	Enhancers	Fetal Intestine Large	intestine
7	chr13:48865800-48867800	Enhancers	Fetal Intestine Small	intestine
8	chr13:48866200-48868000	Enhancers	Small Intestine	intestine
9	chr13:48866200-48876800	Weak transcription	Pancreas	Pancrea
10	chr13:48866200-48877200	Weak transcription	Left Ventricle	heart
11	chr13:48866400-48869800	Weak transcription	Fetal Thymus	thymus
12	chr13:48866400-48870600	Weak transcription	Thymus	Thymus
13	chr13:48866600-48868000	Weak transcription	Adipose Nuclei	Adipose
14	chr13:48866600-48876600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr13:48866800-48870200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr13:48867200-48868200	Enhancers	HepG2	liver
17	chr13:48867200-48869200	Weak transcription	Gastric	stomach

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