Variant report

Variant	rs56835880
Chromosome Location	chr13:48875129-48875130
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:48865268..48867558-chr13:48872289..48875605,4	K562	blood:
2	chr13:48851960..48854495-chr13:48874913..48877525,3	K562	blood:
3	chr13:48807200..48809098-chr13:48874367..48876486,2	K562	blood:
4	chr13:48867552..48869421-chr13:48873308..48875725,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RB1-1	chr13:48874490-48875601	NONHSAT033706

Variant related genes	Relation type
ENSG00000136156	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1002865	1.00[EUR][1000 genomes]
rs34692420	1.00[EUR][1000 genomes]
rs3825419	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4151472	0.82[AFR][1000 genomes]
rs56955865	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60372626	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61683759	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73485077	1.00[EUR][1000 genomes]
rs73485079	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73487044	1.00[ASN][1000 genomes]
rs73487048	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73487051	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73487055	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73487056	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73487058	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7983535	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7986777	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7993670	1.00[EUR][1000 genomes]
rs7996717	1.00[EUR][1000 genomes]
rs7999809	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8002352	1.00[EUR][1000 genomes]
rs9332285	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9332304	1.00[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48844400-48877200	Weak transcription	Aorta	Aorta
2	chr13:48863000-48876400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:48866200-48876800	Weak transcription	Pancreas	Pancrea
4	chr13:48866200-48877200	Weak transcription	Left Ventricle	heart
5	chr13:48866600-48876600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr13:48868000-48876800	Weak transcription	Stomach Mucosa	stomach
7	chr13:48870200-48877000	Weak transcription	HSMMtube	muscle
8	chr13:48871000-48877000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr13:48871200-48877000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr13:48871400-48877000	Weak transcription	Primary B cells from cord blood	blood
11	chr13:48871600-48876600	Weak transcription	Brain Substantia Nigra	brain
12	chr13:48871600-48876800	Weak transcription	HepG2	liver
13	chr13:48871800-48876400	Weak transcription	K562	blood
14	chr13:48871800-48876800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr13:48871800-48877200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr13:48872000-48876800	Weak transcription	Thymus	Thymus
17	chr13:48872200-48876000	Weak transcription	Fetal Thymus	thymus
18	chr13:48872800-48876200	Weak transcription	Dnd41	blood
19	chr13:48873200-48876600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr13:48873400-48876800	Weak transcription	Primary T cells from cord blood	blood
21	chr13:48873400-48876800	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr13:48874000-48876200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr13:48874000-48876600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr13:48874200-48876400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr13:48874200-48876400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr13:48874800-48876400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr13:48875000-48876800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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