Variant report

Variant	rs3825419
Chromosome Location	chr13:48891039-48891040
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:48890081..48892868-chr13:48894864..48897865,3	K562	blood:
2	chr13:48886217..48888440-chr13:48889572..48892484,2	K562	blood:
3	chr13:48890081..48892868-chr13:48895094..48897865,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12584784	1.00[EUR][1000 genomes]
rs12585742	0.83[AFR][1000 genomes]
rs17349061	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs174857	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs198631	0.81[ASN][1000 genomes]
rs2006125	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2006126	0.94[ASN][1000 genomes]
rs2515669	0.91[ASN][1000 genomes]
rs2804094	0.88[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs2804095	0.88[JPT][hapmap]
rs2854342	0.88[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs2854348	0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs3092888	0.87[EUR][1000 genomes]
rs3092898	1.00[EUR][1000 genomes]
rs3092899	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs4151434	0.88[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4151441	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4151442	0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4151448	0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4151452	0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4151456	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4151461	0.86[ASN][1000 genomes]
rs4151472	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs4151474	0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4151476	0.81[ASN][1000 genomes]
rs4151525	0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs4151601	0.86[JPT][hapmap]
rs56835880	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56871512	0.84[ASN][1000 genomes]
rs58658780	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60887299	0.86[ASN][1000 genomes]
rs7324532	0.94[ASN][1000 genomes]
rs7333985	0.87[EUR][1000 genomes]
rs7335353	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73488925	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73495016	1.00[EUR][1000 genomes]
rs74075993	1.00[EUR][1000 genomes]
rs7983002	0.81[ASN][1000 genomes]
rs7995216	0.87[EUR][1000 genomes]
rs877664	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9332054	0.86[JPT][hapmap]
rs9332285	1.00[YRI][hapmap]

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48879400-48894200	Weak transcription	A549	lung
2	chr13:48879800-48892400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr13:48880000-48892000	Weak transcription	HSMMtube	muscle
4	chr13:48880200-48891400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr13:48880200-48892200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr13:48880200-48892200	Weak transcription	Fetal Kidney	kidney
7	chr13:48880200-48892200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr13:48880200-48892600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr13:48880200-48892600	Weak transcription	NH-A	brain
10	chr13:48880200-48893800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr13:48880200-48894400	Weak transcription	Brain Anterior Caudate	brain
12	chr13:48880200-48913200	Weak transcription	Aorta	Aorta
13	chr13:48880400-48891200	Weak transcription	Placenta	Placenta
14	chr13:48880400-48892400	Weak transcription	HMEC	breast
15	chr13:48880400-48892600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr13:48880600-48891800	Weak transcription	HUVEC	blood vessel
17	chr13:48880600-48892200	Weak transcription	Brain Hippocampus Middle	brain
18	chr13:48880600-48892200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr13:48880600-48892400	Weak transcription	Ovary	ovary
20	chr13:48880600-48894600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr13:48880600-48924600	Weak transcription	Psoas Muscle	Psoas
22	chr13:48880800-48892200	Weak transcription	Colon Smooth Muscle	Colon
23	chr13:48880800-48892400	Weak transcription	Primary T cells from cord blood	blood
24	chr13:48880800-48893200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr13:48880800-48895200	Weak transcription	Small Intestine	intestine
26	chr13:48880800-48895600	Weak transcription	Hela-S3	cervix
27	chr13:48880800-48896200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr13:48881200-48892800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr13:48881200-48895600	Weak transcription	HepG2	liver
30	chr13:48882400-48892200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr13:48883000-48892400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr13:48883800-48891800	Weak transcription	Osteobl	bone
33	chr13:48884200-48892600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr13:48884400-48893400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr13:48884600-48892600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr13:48884600-48892800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr13:48884800-48893000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr13:48885400-48892200	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr13:48885800-48892000	Weak transcription	HSMM	muscle
40	chr13:48886600-48892800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr13:48887000-48896200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr13:48887200-48891600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr13:48887200-48892000	Weak transcription	Fetal Heart	heart
44	chr13:48887400-48891400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr13:48887600-48892200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr13:48887800-48892000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr13:48887800-48892800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr13:48888800-48892400	Weak transcription	Brain Substantia Nigra	brain
49	chr13:48889200-48891200	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr13:48889400-48892000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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