Variant report

Variant	rs2804094
Chromosome Location	chr13:48892992-48892993
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:48876409..48879041-chr13:48891404..48895274,4	K562	blood:

Variant related genes	Relation type
ENSG00000231473	Chromatin interaction
ENSG00000139687	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs171988	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs171990	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17349061	0.97[ASN][1000 genomes]
rs174857	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs198564	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs198568	1.00[CEU][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.80[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs198571	1.00[CEU][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.96[EUR][1000 genomes]
rs198574	1.00[CEU][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs198575	1.00[CEU][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs198576	1.00[CEU][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs198577	1.00[CEU][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs198606	1.00[CEU][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs198608	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs198609	1.00[CEU][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs198610	1.00[CEU][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs198614	1.00[CEU][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap]
rs198622	1.00[CEU][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs198623	0.81[AMR][1000 genomes]
rs198624	0.81[AFR][1000 genomes]
rs198627	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs198629	0.85[AFR][1000 genomes]
rs198630	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs198631	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2006125	1.00[ASN][1000 genomes]
rs2006126	1.00[ASN][1000 genomes]
rs2070752	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2515669	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2804095	1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2854342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2854348	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2854353	1.00[CEU][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2854357	1.00[CEU][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2854362	1.00[CEU][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3092888	0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs3092899	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs3825419	0.88[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs398158	1.00[CEU][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.96[EUR][1000 genomes]
rs403390	1.00[CEU][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs406098	1.00[CEU][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4151434	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4151441	0.82[ASN][1000 genomes]
rs4151442	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4151448	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4151452	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4151456	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs4151461	0.80[ASN][1000 genomes]
rs4151474	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4151476	0.82[ASN][1000 genomes]
rs4151525	0.81[JPT][hapmap]
rs4151601	0.81[JPT][hapmap]
rs425834	1.00[CEU][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs427686	1.00[CEU][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58658780	0.82[ASN][1000 genomes]
rs60887299	0.80[ASN][1000 genomes]
rs6561448	1.00[CEU][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes]
rs6561457	0.80[EUR][1000 genomes]
rs7324532	1.00[ASN][1000 genomes]
rs7325962	0.90[JPT][hapmap];0.92[EUR][1000 genomes]
rs7333985	0.80[ASN][1000 genomes]
rs7335353	0.82[ASN][1000 genomes]
rs73488925	0.82[ASN][1000 genomes]
rs7983002	0.82[ASN][1000 genomes]
rs877664	0.82[ASN][1000 genomes]
rs9316385	0.84[EUR][1000 genomes]
rs9332054	0.81[JPT][hapmap]
rs9332278	1.00[CEU][hapmap]

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48879400-48894200	Weak transcription	A549	lung
2	chr13:48880200-48893800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr13:48880200-48894400	Weak transcription	Brain Anterior Caudate	brain
4	chr13:48880200-48913200	Weak transcription	Aorta	Aorta
5	chr13:48880600-48894600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr13:48880600-48924600	Weak transcription	Psoas Muscle	Psoas
7	chr13:48880800-48893200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr13:48880800-48895200	Weak transcription	Small Intestine	intestine
9	chr13:48880800-48895600	Weak transcription	Hela-S3	cervix
10	chr13:48880800-48896200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr13:48881200-48895600	Weak transcription	HepG2	liver
12	chr13:48884400-48893400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr13:48884800-48893000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr13:48887000-48896200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr13:48890000-48894200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr13:48890000-48894400	ZNF genes & repeats	GM12878-XiMat	blood
17	chr13:48890000-48894800	ZNF genes & repeats	Fetal Intestine Large	intestine
18	chr13:48890200-48894200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr13:48890200-48895000	ZNF genes & repeats	Fetal Stomach	stomach
20	chr13:48890200-48896000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
21	chr13:48890600-48893600	Strong transcription	NHLF	lung
22	chr13:48890600-48895000	Weak transcription	Right Atrium	heart
23	chr13:48890600-48895400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr13:48890800-48893200	Genic enhancers	Spleen	Spleen
25	chr13:48890800-48894200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr13:48890800-48896800	ZNF genes & repeats	Dnd41	blood
27	chr13:48891000-48893600	ZNF genes & repeats	Esophagus	oesophagus
28	chr13:48891000-48893800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr13:48891000-48895000	ZNF genes & repeats	Brain Germinal Matrix	brain
30	chr13:48891000-48895400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr13:48891000-48896800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
32	chr13:48891200-48893800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr13:48891200-48894800	ZNF genes & repeats	Placenta	Placenta
34	chr13:48891200-48896200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
35	chr13:48891400-48894800	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr13:48891400-48896000	ZNF genes & repeats	Thymus	Thymus
37	chr13:48891600-48893000	Enhancers	Liver	Liver
38	chr13:48891600-48896000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr13:48891800-48893000	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
40	chr13:48891800-48894400	ZNF genes & repeats	Colonic Mucosa	Colon
41	chr13:48891800-48894600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr13:48891800-48894600	Strong transcription	Osteobl	bone
43	chr13:48891800-48896000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr13:48892000-48893000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr13:48892000-48893000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr13:48892000-48893000	Active TSS	Placenta Amnion	Placenta Amnion
47	chr13:48892000-48893600	Active TSS	Left Ventricle	heart
48	chr13:48892000-48893800	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
49	chr13:48892000-48894200	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
50	chr13:48892000-48894400	Flanking Active TSS	Primary T cells fromperipheralblood	blood

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