Variant report

Variant	rs406098
Chromosome Location	chr13:48963784-48963785
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:48962225..48964484-chr13:48966549..48969073,2	K562	blood:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LPAR6-2	chr13:48963707-48963948	NONHSAT033711
2	lnc-LPAR6-2	chr13:48963707-48963948	NONHSAT033712
3	lnc-LPAR6-2	chr13:48963707-48963948	NONHSAT033710
4	lnc-LPAR6-2	chr13:48963706-48963948	NONHSAT033709
5	lnc-LPAR6-2	chr13:48963707-48963948	NONHSAT033713

No data

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs12584784	0.97[ASN][1000 genomes]
rs171988	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs171990	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs174857	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs198564	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs198568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs198571	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs198574	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs198575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs198576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs198577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs198606	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs198608	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs198609	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs198610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs198614	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs198622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs198623	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs198624	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs198627	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs198629	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs198630	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs198631	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2070752	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2274400	0.88[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs2515669	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2804094	1.00[CEU][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2804095	1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2854342	0.93[ASW][hapmap];1.00[CEU][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2854348	0.90[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2854353	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2854357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2854362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3092888	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3092899	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs3751380	0.89[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs398158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs403390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151434	0.90[JPT][hapmap]
rs4151441	0.95[ASN][1000 genomes]
rs4151442	1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs4151448	1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs4151452	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs4151456	0.86[CHB][hapmap];0.80[JPT][hapmap];0.86[ASN][1000 genomes]
rs4151461	0.86[ASN][1000 genomes]
rs4151474	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs4151476	0.95[ASN][1000 genomes]
rs4151525	0.88[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs4151601	0.88[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs425834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs427686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs449268	0.81[ASW][hapmap];0.91[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap]
rs56871512	0.88[ASN][1000 genomes]
rs58001261	0.85[ASN][1000 genomes]
rs58658780	0.95[ASN][1000 genomes]
rs58933677	0.85[ASN][1000 genomes]
rs60887299	0.86[ASN][1000 genomes]
rs6561448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6561457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6561461	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap]
rs6561465	1.00[CEU][hapmap]
rs7325962	0.89[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes]
rs7329865	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs7333985	0.97[ASN][1000 genomes]
rs7335353	0.95[ASN][1000 genomes]
rs73488925	0.95[ASN][1000 genomes]
rs74075993	1.00[ASN][1000 genomes]
rs7983002	0.95[ASN][1000 genomes]
rs7995216	0.89[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs7996186	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs7998781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8001241	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.87[TSI][hapmap]
rs8002565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs877664	0.95[ASN][1000 genomes]
rs9316385	0.80[EUR][1000 genomes]
rs9316386	0.82[MEX][hapmap]
rs9316396	0.87[TSI][hapmap]
rs9331965	0.88[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs9331973	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs9332054	0.88[CHD][hapmap];0.90[JPT][hapmap]
rs9332278	1.00[CEU][hapmap]
rs9595931	1.00[CEU][hapmap]

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48909000-48972200	Weak transcription	NHEK	skin
2	chr13:48912200-48968200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr13:48914000-48965800	Weak transcription	Lung	lung
4	chr13:48914800-48972000	Weak transcription	NHLF	lung
5	chr13:48916800-48985400	Weak transcription	Colonic Mucosa	Colon
6	chr13:48918600-48967200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr13:48920200-48974400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr13:48921600-48972000	Weak transcription	Stomach Mucosa	stomach
9	chr13:48925200-48974800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr13:48925400-48976400	Weak transcription	Ovary	ovary
11	chr13:48925600-48968000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr13:48926800-48972000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr13:48928200-48971800	Weak transcription	A549	lung
14	chr13:48928400-48963800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr13:48929800-48968400	Weak transcription	Esophagus	oesophagus
16	chr13:48933400-48974000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr13:48934600-48984200	Weak transcription	Right Ventricle	heart
18	chr13:48935400-48968200	Weak transcription	Spleen	Spleen
19	chr13:48936000-48974600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr13:48936200-48968200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr13:48936400-48973200	Weak transcription	Hela-S3	cervix
22	chr13:48937800-48964000	Weak transcription	Fetal Intestine Small	intestine
23	chr13:48941800-48973200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr13:48942400-48967200	Weak transcription	Brain Germinal Matrix	brain
25	chr13:48943000-48970800	Weak transcription	Pancreas	Pancrea
26	chr13:48943600-48984200	Weak transcription	Brain Angular Gyrus	brain
27	chr13:48944000-48974400	Weak transcription	Brain Anterior Caudate	brain
28	chr13:48944200-48973800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr13:48944600-48965600	Weak transcription	Aorta	Aorta
30	chr13:48944600-48983400	Weak transcription	Psoas Muscle	Psoas
31	chr13:48945000-48966000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr13:48945000-48972000	Weak transcription	HSMMtube	muscle
33	chr13:48945200-48967000	Weak transcription	HepG2	liver
34	chr13:48945400-48974400	Weak transcription	Small Intestine	intestine
35	chr13:48949200-48967800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr13:48949400-48972800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr13:48949600-48965400	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr13:48949600-48968200	Weak transcription	Duodenum Mucosa	Duodenum
39	chr13:48949600-48968200	Weak transcription	Fetal Kidney	kidney
40	chr13:48950000-48963800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr13:48950000-48967800	Weak transcription	Stomach Smooth Muscle	stomach
42	chr13:48950000-48967800	Weak transcription	Thymus	Thymus
43	chr13:48950000-48968200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr13:48950600-48965600	Weak transcription	Left Ventricle	heart
45	chr13:48950600-48968400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr13:48951200-48965400	Weak transcription	Placenta	Placenta
47	chr13:48952600-48967400	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr13:48953800-48965400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr13:48953800-48972000	Weak transcription	Osteobl	bone
50	chr13:48954000-48965600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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