Variant report

Variant	rs4151525
Chromosome Location	chr13:48948038-48948039
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1002865	1.00[CEU][hapmap]
rs12584784	0.85[ASN][1000 genomes]
rs171988	0.88[ASN][1000 genomes]
rs171990	0.91[ASN][1000 genomes]
rs174857	0.88[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs1926596	0.83[EUR][1000 genomes]
rs198568	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs198571	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs198574	0.89[JPT][hapmap]
rs198575	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs198576	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs198577	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs198606	0.88[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs198608	0.85[ASN][1000 genomes]
rs198609	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs198610	0.88[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs198614	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs198622	0.88[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs198629	0.80[ASN][1000 genomes]
rs198630	0.85[ASN][1000 genomes]
rs198631	0.90[ASN][1000 genomes]
rs2070752	0.91[ASN][1000 genomes]
rs2274400	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2804094	0.81[JPT][hapmap]
rs2804095	0.88[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs2854342	0.81[JPT][hapmap]
rs2854348	0.81[JPT][hapmap]
rs2854353	0.88[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs2854357	0.88[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs2854362	0.88[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs3092888	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs3092899	0.88[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs3825419	0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs398158	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs403390	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs406098	0.88[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs4151434	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs4151441	0.90[ASN][1000 genomes]
rs4151442	1.00[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs4151448	1.00[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs4151452	1.00[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs4151456	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4151461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4151474	1.00[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs4151476	0.90[ASN][1000 genomes]
rs4151601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs425834	0.88[CHB][hapmap]
rs427686	0.88[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs56871512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58001261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58658780	0.90[ASN][1000 genomes]
rs58854758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58933677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60887299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6561448	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs6561457	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs6561461	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs7325962	0.90[JPT][hapmap]
rs7333985	0.91[ASN][1000 genomes]
rs7335353	0.90[ASN][1000 genomes]
rs73488925	0.90[ASN][1000 genomes]
rs74075993	0.88[ASN][1000 genomes]
rs7981869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7983002	0.90[ASN][1000 genomes]
rs7987935	0.83[EUR][1000 genomes]
rs7989969	1.00[AFR][1000 genomes]
rs7995216	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs7996186	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7996717	1.00[CEU][hapmap]
rs7998781	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs8001241	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs8002352	1.00[CEU][hapmap]
rs8002565	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs877664	0.90[ASN][1000 genomes]
rs9331959	1.00[AMR][1000 genomes]
rs9331965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9331973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332054	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332246	1.00[CEU][hapmap]
rs9332278	1.00[CEU][hapmap]
rs9332304	1.00[CEU][hapmap]

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48909000-48972200	Weak transcription	NHEK	skin
2	chr13:48911800-48948400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr13:48912200-48968200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr13:48914000-48965800	Weak transcription	Lung	lung
5	chr13:48914800-48972000	Weak transcription	NHLF	lung
6	chr13:48916400-48948400	Weak transcription	NH-A	brain
7	chr13:48916800-48985400	Weak transcription	Colonic Mucosa	Colon
8	chr13:48918000-48954400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr13:48918600-48967200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr13:48920200-48974400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr13:48921600-48972000	Weak transcription	Stomach Mucosa	stomach
12	chr13:48925000-48962800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr13:48925200-48949000	Weak transcription	Fetal Kidney	kidney
14	chr13:48925200-48974800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr13:48925400-48948200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr13:48925400-48976400	Weak transcription	Ovary	ovary
17	chr13:48925600-48968000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr13:48926200-48949200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr13:48926200-48954600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr13:48926800-48972000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr13:48928200-48948400	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr13:48928200-48948400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr13:48928200-48954400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr13:48928200-48954600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr13:48928200-48971800	Weak transcription	A549	lung
26	chr13:48928400-48952800	Weak transcription	Fetal Heart	heart
27	chr13:48928400-48963800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr13:48929400-48948400	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr13:48929800-48968400	Weak transcription	Esophagus	oesophagus
30	chr13:48932200-48948400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr13:48932600-48948400	Weak transcription	GM12878-XiMat	blood
32	chr13:48932600-48957600	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr13:48932800-48957400	Weak transcription	Brain Substantia Nigra	brain
34	chr13:48933200-48954400	Weak transcription	Colon Smooth Muscle	Colon
35	chr13:48933400-48974000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr13:48934400-48948400	Weak transcription	Thymus	Thymus
37	chr13:48934600-48984200	Weak transcription	Right Ventricle	heart
38	chr13:48934800-48948200	Weak transcription	Brain Hippocampus Middle	brain
39	chr13:48934800-48949000	Weak transcription	Fetal Intestine Large	intestine
40	chr13:48935000-48948400	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr13:48935400-48968200	Weak transcription	Spleen	Spleen
42	chr13:48936000-48974600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr13:48936200-48968200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr13:48936400-48973200	Weak transcription	Hela-S3	cervix
45	chr13:48937800-48964000	Weak transcription	Fetal Intestine Small	intestine
46	chr13:48938000-48949200	Weak transcription	Placenta	Placenta
47	chr13:48938200-48955400	Weak transcription	Primary hematopoietic stem cells	blood
48	chr13:48939800-48954400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr13:48941800-48973200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr13:48942400-48967200	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links