Variant report

Variant	rs2854357
Chromosome Location	chr13:48950053-48950054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs12584784	0.93[ASN][1000 genomes]
rs171988	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs171990	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs174857	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs198564	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs198568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs198571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs198574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs198575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs198576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs198577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs198606	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs198608	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs198609	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs198610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs198614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs198622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs198623	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs198624	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs198627	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs198629	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs198630	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs198631	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2070752	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2274400	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs2515669	0.81[AFR][1000 genomes]
rs2804094	1.00[CEU][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2804095	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2854342	1.00[CEU][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2854348	0.91[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2854353	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2854362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3092888	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3092899	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs398158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs403390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs406098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4151434	0.91[JPT][hapmap]
rs4151441	0.95[ASN][1000 genomes]
rs4151442	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs4151448	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs4151452	1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs4151456	0.86[CHB][hapmap];0.80[JPT][hapmap];0.86[ASN][1000 genomes]
rs4151461	0.86[ASN][1000 genomes]
rs4151474	1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs4151476	0.95[ASN][1000 genomes]
rs4151525	0.88[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs4151601	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs425834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs427686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs449268	0.84[YRI][hapmap]
rs56871512	0.88[ASN][1000 genomes]
rs58001261	0.81[ASN][1000 genomes]
rs58658780	0.95[ASN][1000 genomes]
rs58933677	0.81[ASN][1000 genomes]
rs60887299	0.86[ASN][1000 genomes]
rs6561448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6561457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6561461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7325962	0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs7333985	0.97[ASN][1000 genomes]
rs7335353	0.95[ASN][1000 genomes]
rs73488925	0.95[ASN][1000 genomes]
rs74075993	0.97[ASN][1000 genomes]
rs7983002	0.95[ASN][1000 genomes]
rs7995216	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs7996186	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs7998781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8001241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8002565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs877664	0.95[ASN][1000 genomes]
rs9316385	0.80[EUR][1000 genomes]
rs9331965	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs9331973	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs9332054	0.90[JPT][hapmap]
rs9332278	1.00[CEU][hapmap]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48909000-48972200	Weak transcription	NHEK	skin
2	chr13:48912200-48968200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr13:48914000-48965800	Weak transcription	Lung	lung
4	chr13:48914800-48972000	Weak transcription	NHLF	lung
5	chr13:48916800-48985400	Weak transcription	Colonic Mucosa	Colon
6	chr13:48918000-48954400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr13:48918600-48967200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr13:48920200-48974400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr13:48921600-48972000	Weak transcription	Stomach Mucosa	stomach
10	chr13:48925000-48962800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr13:48925200-48974800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr13:48925400-48976400	Weak transcription	Ovary	ovary
13	chr13:48925600-48968000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr13:48926200-48954600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr13:48926800-48972000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr13:48928200-48954400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr13:48928200-48954600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr13:48928200-48971800	Weak transcription	A549	lung
19	chr13:48928400-48952800	Weak transcription	Fetal Heart	heart
20	chr13:48928400-48963800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr13:48929800-48968400	Weak transcription	Esophagus	oesophagus
22	chr13:48932600-48957600	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr13:48932800-48957400	Weak transcription	Brain Substantia Nigra	brain
24	chr13:48933200-48954400	Weak transcription	Colon Smooth Muscle	Colon
25	chr13:48933400-48974000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr13:48934600-48984200	Weak transcription	Right Ventricle	heart
27	chr13:48935400-48968200	Weak transcription	Spleen	Spleen
28	chr13:48936000-48974600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr13:48936200-48968200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr13:48936400-48973200	Weak transcription	Hela-S3	cervix
31	chr13:48937800-48964000	Weak transcription	Fetal Intestine Small	intestine
32	chr13:48938200-48955400	Weak transcription	Primary hematopoietic stem cells	blood
33	chr13:48939800-48954400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr13:48941800-48973200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr13:48942400-48967200	Weak transcription	Brain Germinal Matrix	brain
36	chr13:48943000-48962000	Weak transcription	Fetal Brain Female	brain
37	chr13:48943000-48970800	Weak transcription	Pancreas	Pancrea
38	chr13:48943200-48951400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr13:48943200-48957200	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr13:48943600-48984200	Weak transcription	Brain Angular Gyrus	brain
41	chr13:48944000-48974400	Weak transcription	Brain Anterior Caudate	brain
42	chr13:48944200-48973800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr13:48944600-48965600	Weak transcription	Aorta	Aorta
44	chr13:48944600-48983400	Weak transcription	Psoas Muscle	Psoas
45	chr13:48944800-48954400	Weak transcription	HMEC	breast
46	chr13:48945000-48966000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr13:48945000-48972000	Weak transcription	HSMMtube	muscle
48	chr13:48945200-48967000	Weak transcription	HepG2	liver
49	chr13:48945400-48974400	Weak transcription	Small Intestine	intestine
50	chr13:48946200-48953400	Weak transcription	Fetal Muscle Leg	muscle

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