The 2.0 version of rSNPBase

Variant report

Variant rs171990
Chromosome Location chr13:48931243-48931244
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:48908400-48944800 Weak transcription Small Intestine intestine
2 chr13:48909000-48972200 Weak transcription NHEK skin
3 chr13:48911800-48948400 Weak transcription Stomach Smooth Muscle stomach
4 chr13:48912200-48968200 Weak transcription Brain Cingulate Gyrus brain
5 chr13:48913400-48944200 Weak transcription Aorta Aorta
6 chr13:48914000-48944400 Weak transcription Fetal Stomach stomach
7 chr13:48914000-48965800 Weak transcription Lung lung
8 chr13:48914800-48972000 Weak transcription NHLF lung
9 chr13:48916200-48947400 Weak transcription Fetal Brain Male brain
10 chr13:48916400-48948400 Weak transcription NH-A brain
11 chr13:48916800-48985400 Weak transcription Colonic Mucosa Colon
12 chr13:48917800-48944400 Weak transcription HepG2 liver
13 chr13:48918000-48954400 Weak transcription Primary T killer memory cells from peripheral blood blood
14 chr13:48918200-48937200 Weak transcription Placenta Placenta
15 chr13:48918600-48967200 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr13:48920200-48974400 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr13:48921600-48972000 Weak transcription Stomach Mucosa stomach
18 chr13:48925000-48934200 Weak transcription HMEC breast
19 chr13:48925000-48944200 Weak transcription HSMMtube muscle
20 chr13:48925000-48962800 Weak transcription Brain Inferior Temporal Lobe brain
21 chr13:48925200-48947400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr13:48925200-48949000 Weak transcription Fetal Kidney kidney
23 chr13:48925200-48974800 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr13:48925400-48933000 Weak transcription Rectal Smooth Muscle rectum
25 chr13:48925400-48939600 Weak transcription Osteobl bone
26 chr13:48925400-48948200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr13:48925400-48976400 Weak transcription Ovary ovary
28 chr13:48925600-48968000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
29 chr13:48925800-48943600 Weak transcription Skeletal Muscle Female skeletal muscle
30 chr13:48926200-48949200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
31 chr13:48926200-48954600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
32 chr13:48926400-48943400 Weak transcription Left Ventricle heart
33 chr13:48926800-48972000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
34 chr13:48927600-48934400 Weak transcription Primary monocytes fromperipheralblood blood
35 chr13:48927800-48934200 Weak transcription Primary T cells fromperipheralblood blood
36 chr13:48928000-48948000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
37 chr13:48928200-48932800 Weak transcription Duodenum Smooth Muscle Duodenum
38 chr13:48928200-48934200 Weak transcription Breast Myoepithelial Primary Cells Breast
39 chr13:48928200-48934200 Weak transcription Brain Hippocampus Middle brain
40 chr13:48928200-48934200 Weak transcription NHDF-Ad bronchial
41 chr13:48928200-48937200 Weak transcription Liver Liver
42 chr13:48928200-48948400 Weak transcription Primary neutrophils fromperipheralblood blood
43 chr13:48928200-48948400 Weak transcription Primary T killer naive cells fromperipheralblood blood
44 chr13:48928200-48954400 Weak transcription Primary T regulatory cells fromperipheralblood blood
45 chr13:48928200-48954600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
46 chr13:48928200-48971800 Weak transcription A549 lung
47 chr13:48928400-48931600 Weak transcription Dnd41 blood
48 chr13:48928400-48934000 Weak transcription Primary B cells from peripheral blood blood
49 chr13:48928400-48934200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
50 chr13:48928400-48934200 Weak transcription Fetal Lung lung

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Last update: Aug 31, 2015