The 2.0 version of rSNPBase

Variant report

Variant rs73488925
Chromosome Location chr13:48927108-48927109
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:82 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:48892600-48927800 Weak transcription HUVEC blood vessel
2 chr13:48908400-48944800 Weak transcription Small Intestine intestine
3 chr13:48908800-48927600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr13:48909000-48972200 Weak transcription NHEK skin
5 chr13:48911800-48948400 Weak transcription Stomach Smooth Muscle stomach
6 chr13:48912200-48968200 Weak transcription Brain Cingulate Gyrus brain
7 chr13:48913400-48944200 Weak transcription Aorta Aorta
8 chr13:48914000-48944400 Weak transcription Fetal Stomach stomach
9 chr13:48914000-48965800 Weak transcription Lung lung
10 chr13:48914400-48927200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
11 chr13:48914800-48972000 Weak transcription NHLF lung
12 chr13:48916200-48947400 Weak transcription Fetal Brain Male brain
13 chr13:48916400-48948400 Weak transcription NH-A brain
14 chr13:48916800-48985400 Weak transcription Colonic Mucosa Colon
15 chr13:48917600-48928400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
16 chr13:48917800-48944400 Weak transcription HepG2 liver
17 chr13:48918000-48954400 Weak transcription Primary T killer memory cells from peripheral blood blood
18 chr13:48918200-48937200 Weak transcription Placenta Placenta
19 chr13:48918600-48967200 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr13:48920200-48974400 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr13:48921600-48972000 Weak transcription Stomach Mucosa stomach
22 chr13:48922200-48927800 Weak transcription Fetal Heart heart
23 chr13:48923200-48927400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
24 chr13:48923200-48929800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr13:48923600-48928400 Strong transcription Fetal Thymus thymus
26 chr13:48924000-48927200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
27 chr13:48924600-48927800 Weak transcription Brain Hippocampus Middle brain
28 chr13:48924800-48927200 ZNF genes & repeats Fetal Brain Female brain
29 chr13:48924800-48928400 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
30 chr13:48924800-48929200 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
31 chr13:48925000-48927800 Weak transcription Psoas Muscle Psoas
32 chr13:48925000-48928400 ZNF genes & repeats Fetal Lung lung
33 chr13:48925000-48929800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr13:48925000-48934200 Weak transcription HMEC breast
35 chr13:48925000-48944200 Weak transcription HSMMtube muscle
36 chr13:48925000-48962800 Weak transcription Brain Inferior Temporal Lobe brain
37 chr13:48925200-48927200 Weak transcription Primary T regulatory cells fromperipheralblood blood
38 chr13:48925200-48927800 Weak transcription Adipose Nuclei Adipose
39 chr13:48925200-48928200 ZNF genes & repeats Primary B cells from cord blood blood
40 chr13:48925200-48947400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr13:48925200-48949000 Weak transcription Fetal Kidney kidney
42 chr13:48925200-48974800 Weak transcription Skeletal Muscle Male skeletal muscle
43 chr13:48925400-48927400 Weak transcription Duodenum Mucosa Duodenum
44 chr13:48925400-48927600 Weak transcription HSMM muscle
45 chr13:48925400-48928800 Weak transcription Rectal Mucosa Donor 29 rectum
46 chr13:48925400-48933000 Weak transcription Rectal Smooth Muscle rectum
47 chr13:48925400-48939600 Weak transcription Osteobl bone
48 chr13:48925400-48948200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
49 chr13:48925400-48976400 Weak transcription Ovary ovary
50 chr13:48925600-48927400 Weak transcription Duodenum Smooth Muscle Duodenum

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Last update: Aug 31, 2015