The 2.0 version of rSNPBase

Variant report

Variant rs2515669
Chromosome Location chr13:48895804-48895805
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:48880200-48913200 Weak transcription Aorta Aorta
2 chr13:48880600-48924600 Weak transcription Psoas Muscle Psoas
3 chr13:48880800-48896200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
4 chr13:48887000-48896200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr13:48890200-48896000 ZNF genes & repeats Fetal Adrenal Gland Adrenal Gland
6 chr13:48890800-48896800 ZNF genes & repeats Dnd41 blood
7 chr13:48891000-48896800 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
8 chr13:48891200-48896200 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
9 chr13:48891400-48896000 ZNF genes & repeats Thymus Thymus
10 chr13:48891600-48896000 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin01 Skin
11 chr13:48891800-48896000 Weak transcription iPS-15b Cell Line embryonic stem cell
12 chr13:48892200-48896000 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
13 chr13:48892200-48897000 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
14 chr13:48892400-48896000 Active TSS Rectal Mucosa Donor 31 rectum
15 chr13:48892600-48927800 Weak transcription HUVEC blood vessel
16 chr13:48894200-48896000 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr13:48894200-48896000 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr13:48894400-48896000 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
19 chr13:48894400-48896200 Active TSS NHEK skin
20 chr13:48894400-48906400 Weak transcription Pancreas Pancrea
21 chr13:48894400-48913800 Weak transcription HSMM muscle
22 chr13:48894600-48896000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
23 chr13:48894600-48896000 Active TSS Primary T cells from cord blood blood
24 chr13:48894600-48896000 Active TSS Adipose Nuclei Adipose
25 chr13:48894600-48896000 Active TSS Colonic Mucosa Colon
26 chr13:48894600-48896000 Active TSS Duodenum Mucosa Duodenum
27 chr13:48894600-48896600 Weak transcription Osteobl bone
28 chr13:48894600-48919200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
29 chr13:48894800-48896200 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr13:48894800-48907600 Weak transcription Muscle Satellite Cultured Cells --
31 chr13:48894800-48913200 Weak transcription Lung lung
32 chr13:48895000-48896000 Bivalent/Poised TSS Fetal Lung lung
33 chr13:48895000-48896200 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr13:48895000-48896200 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr13:48895000-48896200 Active TSS Pancreatic Islets Pancreatic Islet
36 chr13:48895200-48896000 Bivalent/Poised TSS Fetal Intestine Large intestine
37 chr13:48895200-48896000 Active TSS Fetal Kidney kidney
38 chr13:48895200-48896000 Active TSS Left Ventricle heart
39 chr13:48895200-48916800 Weak transcription Skeletal Muscle Female skeletal muscle
40 chr13:48895200-48923600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
41 chr13:48895200-48924600 Weak transcription HSMMtube muscle
42 chr13:48895400-48896000 ZNF genes & repeats Primary monocytes fromperipheralblood blood
43 chr13:48895400-48896000 Enhancers Primary B cells from peripheral blood blood
44 chr13:48895400-48896000 Enhancers Primary T cells fromperipheralblood blood
45 chr13:48895400-48896000 Weak transcription Primary T helper naive cells from peripheral blood blood
46 chr13:48895400-48896000 Enhancers Primary Natural Killer cells fromperipheralblood blood
47 chr13:48895400-48896000 Bivalent/Poised TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr13:48895400-48902800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
49 chr13:48895400-48908200 Weak transcription Small Intestine intestine
50 chr13:48895400-48912800 Weak transcription Fetal Thymus thymus

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Last update: Aug 31, 2015