Variant report

Variant	rs61742974
Chromosome Location	chr11:46924404-46924405
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46920307..46922992-chr11:46923917..46925477,2	MCF-7	breast:

rs_ID	r²[population]
rs10838630	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12286167	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12290700	0.81[AFR][1000 genomes]
rs12294884	1.00[AMR][1000 genomes]
rs4752812	0.85[AFR][1000 genomes]
rs4752948	0.84[AFR][1000 genomes]
rs4752949	0.84[AFR][1000 genomes]
rs61741501	0.92[AFR][1000 genomes]
rs6485703	0.85[AFR][1000 genomes]
rs6485704	0.83[AFR][1000 genomes]
rs7118028	0.85[AFR][1000 genomes]
rs7926667	0.92[AFR][1000 genomes]
rs879720	0.92[AFR][1000 genomes]
rs879721	0.92[AFR][1000 genomes]

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46896600-46928200	Weak transcription	Fetal Heart	heart
2	chr11:46911200-46933800	Weak transcription	Fetal Kidney	kidney
3	chr11:46917800-46934000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:46917800-46934000	Weak transcription	NHLF	lung
5	chr11:46918200-46925400	Weak transcription	Fetal Brain Male	brain
6	chr11:46918400-46925600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:46918800-46925400	Weak transcription	HSMMtube	muscle
8	chr11:46918800-46928000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:46918800-46934000	Weak transcription	Colonic Mucosa	Colon
10	chr11:46919800-46927800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:46920400-46928400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:46920600-46925200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:46921200-46928400	Weak transcription	Fetal Brain Female	brain
14	chr11:46921600-46924600	Weak transcription	Right Ventricle	heart
15	chr11:46921600-46925200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:46921600-46925400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:46921600-46925400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:46921600-46927400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:46921600-46928000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:46921600-46928000	Weak transcription	Ovary	ovary
21	chr11:46921600-46933800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:46921600-46933800	Weak transcription	NHEK	skin
23	chr11:46921600-46934000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr11:46921600-46934200	Weak transcription	Esophagus	oesophagus
25	chr11:46921600-46936000	Weak transcription	Pancreas	Pancrea
26	chr11:46921600-46936000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr11:46921800-46924800	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr11:46921800-46928000	Weak transcription	HepG2	liver
29	chr11:46921800-46934000	Weak transcription	Fetal Intestine Large	intestine
30	chr11:46921800-46938400	Weak transcription	Gastric	stomach
31	chr11:46922000-46924600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:46922000-46924600	Weak transcription	Spleen	Spleen
33	chr11:46922000-46925200	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr11:46922000-46925200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr11:46922000-46925200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr11:46922000-46925400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:46922000-46925400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr11:46922000-46925800	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr11:46922000-46928000	Weak transcription	Placenta	Placenta
40	chr11:46922000-46928200	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr11:46922000-46928400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr11:46922000-46928400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr11:46922200-46925200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:46922200-46925200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr11:46922200-46934000	Weak transcription	Duodenum Mucosa	Duodenum
46	chr11:46922200-46934000	Weak transcription	Fetal Intestine Small	intestine
47	chr11:46922600-46925800	Enhancers	Brain Cingulate Gyrus	brain
48	chr11:46922800-46925600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr11:46923000-46925400	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr11:46923000-46926800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links