Variant report

Variant	rs879720
Chromosome Location	chr11:46918577-46918578
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46917201..46919411-chr11:46921325..46923031,2	K562	blood:
2	chr11:46918253..46919096-chr11:47182705..47183252,2	MCF-7	breast:
3	chr11:46918243..46919139-chr11:46926900..46927666,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12286167	0.88[AFR][1000 genomes]
rs4752812	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752813	1.00[AMR][1000 genomes]
rs4752948	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752949	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61741501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61742974	0.92[AFR][1000 genomes]
rs6485703	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6485704	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7118028	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7119536	0.89[AMR][1000 genomes]
rs7926667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs879721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46877600-46919000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:46878400-46922000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:46886000-46921800	Weak transcription	Hela-S3	cervix
4	chr11:46887600-46918600	Weak transcription	NHDF-Ad	bronchial
5	chr11:46896600-46928200	Weak transcription	Fetal Heart	heart
6	chr11:46897400-46921800	Weak transcription	HMEC	breast
7	chr11:46898800-46920000	Weak transcription	Stomach Mucosa	stomach
8	chr11:46900800-46923400	Weak transcription	Aorta	Aorta
9	chr11:46905600-46922600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:46907000-46921200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:46910000-46918600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:46910400-46919000	Strong transcription	Duodenum Mucosa	Duodenum
13	chr11:46911200-46933800	Weak transcription	Fetal Kidney	kidney
14	chr11:46912800-46918800	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:46913000-46918600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:46913000-46918800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:46913000-46922800	Strong transcription	Fetal Stomach	stomach
18	chr11:46913400-46918600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:46914200-46918800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:46914400-46919000	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr11:46915800-46918800	Strong transcription	Fetal Intestine Small	intestine
22	chr11:46916000-46918600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr11:46916000-46918800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:46916000-46923400	Strong transcription	Fetal Lung	lung
25	chr11:46916400-46919800	Weak transcription	Right Ventricle	heart
26	chr11:46916600-46918600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr11:46916600-46918600	Genic enhancers	Brain Inferior Temporal Lobe	brain
28	chr11:46916600-46918600	Genic enhancers	Brain Substantia Nigra	brain
29	chr11:46916600-46918600	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr11:46916600-46918800	Genic enhancers	Brain Anterior Caudate	brain
31	chr11:46916600-46918800	Genic enhancers	Fetal Muscle Trunk	muscle
32	chr11:46916600-46919800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:46916800-46918800	Genic enhancers	Brain Hippocampus Middle	brain
34	chr11:46917000-46918600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr11:46917000-46920000	Weak transcription	Ovary	ovary
36	chr11:46917200-46918800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:46917200-46918800	Enhancers	Muscle Satellite Cultured Cells	--
38	chr11:46917200-46918800	Genic enhancers	Cortex derived primary cultured neurospheres	brain
39	chr11:46917200-46918800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr11:46917200-46918800	Enhancers	Left Ventricle	heart
41	chr11:46917400-46918600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr11:46917400-46918600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:46917400-46918600	Enhancers	Esophagus	oesophagus
44	chr11:46917400-46918800	Strong transcription	Colonic Mucosa	Colon
45	chr11:46917400-46918800	Enhancers	HSMM	muscle
46	chr11:46917600-46918600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:46917600-46918800	Genic enhancers	HSMMtube	muscle
48	chr11:46917600-46920200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:46917600-46920800	Weak transcription	NHEK	skin
50	chr11:46917800-46918800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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