Variant report

Variant	rs4752949
Chromosome Location	chr11:46904471-46904472
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46879162..46881654-chr11:46902746..46905696,2	K562	blood:
2	chr11:46903167..46905489-chr11:46916312..46918025,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10838630	0.93[AFR][1000 genomes]
rs12286167	0.90[AFR][1000 genomes]
rs4752812	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752813	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61741501	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61742974	0.84[AFR][1000 genomes]
rs6485703	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6485704	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7118028	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7119536	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7926667	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs879720	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs879721	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46868000-46909000	Weak transcription	Small Intestine	intestine
2	chr11:46868600-46917400	Weak transcription	Fetal Brain Male	brain
3	chr11:46868800-46913000	Weak transcription	A549	lung
4	chr11:46875600-46917200	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:46876000-46905200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:46876600-46911400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:46876600-46916600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:46877400-46909200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:46877400-46909200	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:46877400-46912000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:46877400-46912600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr11:46877600-46919000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:46877800-46912200	Strong transcription	Fetal Stomach	stomach
14	chr11:46877800-46912400	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:46878000-46908200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:46878400-46909600	Strong transcription	Fetal Muscle Leg	muscle
17	chr11:46878400-46922000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:46879000-46909000	Strong transcription	Duodenum Mucosa	Duodenum
19	chr11:46879800-46918200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr11:46880800-46910800	Strong transcription	Fetal Muscle Trunk	muscle
21	chr11:46886000-46921800	Weak transcription	Hela-S3	cervix
22	chr11:46886200-46907000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:46887600-46918600	Weak transcription	NHDF-Ad	bronchial
24	chr11:46892600-46906200	Strong transcription	Brain Inferior Temporal Lobe	brain
25	chr11:46895400-46917400	Weak transcription	NHLF	lung
26	chr11:46896600-46928200	Weak transcription	Fetal Heart	heart
27	chr11:46897000-46904800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr11:46897400-46907400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr11:46897400-46921800	Weak transcription	HMEC	breast
30	chr11:46897600-46916800	Weak transcription	Psoas Muscle	Psoas
31	chr11:46897600-46917200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr11:46898600-46914400	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:46898600-46916600	Weak transcription	Liver	Liver
34	chr11:46898800-46904800	Weak transcription	Esophagus	oesophagus
35	chr11:46898800-46906600	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr11:46898800-46916600	Weak transcription	Gastric	stomach
37	chr11:46898800-46920000	Weak transcription	Stomach Mucosa	stomach
38	chr11:46899000-46904600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:46899000-46905200	Weak transcription	Lung	lung
40	chr11:46899000-46906200	Weak transcription	Adipose Nuclei	Adipose
41	chr11:46899000-46910400	Weak transcription	NHEK	skin
42	chr11:46899000-46916000	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr11:46899600-46914200	Weak transcription	Brain Germinal Matrix	brain
44	chr11:46900400-46914600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr11:46900600-46904800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:46900800-46904800	Weak transcription	Left Ventricle	heart
47	chr11:46900800-46904800	Weak transcription	Ovary	ovary
48	chr11:46900800-46905000	Weak transcription	Colonic Mucosa	Colon
49	chr11:46900800-46907400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr11:46900800-46923400	Weak transcription	Aorta	Aorta

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