Variant report

Variant	rs61757920
Chromosome Location	chr4:149086707-149086708
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10519942	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11725360	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11729617	0.82[ASN][1000 genomes]
rs17024404	0.93[ASN][1000 genomes]
rs17024408	0.93[ASN][1000 genomes]
rs17024437	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17024443	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17620330	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28367185	0.93[ASN][1000 genomes]
rs28368806	0.96[ASN][1000 genomes]
rs28789690	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3846299	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3931397	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57616130	0.93[ASN][1000 genomes]
rs62331988	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62332226	0.96[ASN][1000 genomes]
rs6811001	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6816503	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7670173	0.96[ASN][1000 genomes]
rs7670229	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149041400-149092000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr4:149045600-149104800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:149046600-149087400	Weak transcription	Aorta	Aorta
4	chr4:149055000-149087400	Weak transcription	Psoas Muscle	Psoas
5	chr4:149063000-149087400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:149067600-149087400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:149068000-149097400	Weak transcription	Spleen	Spleen
8	chr4:149068200-149087400	Weak transcription	Esophagus	oesophagus
9	chr4:149069200-149087400	Weak transcription	Adipose Nuclei	Adipose
10	chr4:149076000-149088200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr4:149076000-149094600	Weak transcription	Fetal Stomach	stomach
12	chr4:149081800-149086800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr4:149083000-149088600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr4:149083200-149087400	Weak transcription	Right Ventricle	heart
15	chr4:149084000-149087400	Weak transcription	Right Atrium	heart
16	chr4:149084000-149092200	Weak transcription	Gastric	stomach
17	chr4:149084000-149094400	Weak transcription	Pancreas	Pancrea
18	chr4:149084000-149106200	Weak transcription	Lung	lung
19	chr4:149084800-149087200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr4:149084800-149087600	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr4:149085200-149088000	Enhancers	Colon Smooth Muscle	Colon
22	chr4:149085200-149092000	Weak transcription	HMEC	breast
23	chr4:149085200-149092400	Weak transcription	Fetal Heart	heart
24	chr4:149085400-149091200	Weak transcription	NHEK	skin
25	chr4:149085400-149092800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr4:149085800-149087400	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr4:149085800-149087600	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr4:149086000-149087200	Weak transcription	Brain Anterior Caudate	brain
29	chr4:149086000-149091400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr4:149086200-149087000	Weak transcription	HSMMtube	muscle
31	chr4:149086200-149087200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr4:149086200-149087200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr4:149086200-149087200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr4:149086200-149087400	Weak transcription	Left Ventricle	heart
35	chr4:149086200-149087400	Weak transcription	Ovary	ovary
36	chr4:149086200-149088000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr4:149086200-149088200	Weak transcription	Fetal Kidney	kidney
38	chr4:149086200-149091000	Weak transcription	Fetal Intestine Small	intestine
39	chr4:149086200-149091600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr4:149086200-149091600	Weak transcription	Fetal Intestine Large	intestine
41	chr4:149086200-149092200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr4:149086200-149092600	Weak transcription	Small Intestine	intestine
43	chr4:149086200-149095000	Weak transcription	Stomach Mucosa	stomach
44	chr4:149086400-149086800	Weak transcription	Fetal Muscle Leg	muscle
45	chr4:149086400-149086800	Weak transcription	Rectal Smooth Muscle	rectum
46	chr4:149086400-149087400	Weak transcription	Liver	Liver
47	chr4:149086400-149087400	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr4:149086600-149086800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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