Variant report

Variant	rs11729617
Chromosome Location	chr4:149052875-149052876
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10023128	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10023233	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11726122	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11731400	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17024404	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17024408	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17024437	0.85[ASN][1000 genomes]
rs17024443	0.82[ASN][1000 genomes]
rs28367185	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28368806	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28789690	0.85[ASN][1000 genomes]
rs3846299	0.85[ASN][1000 genomes]
rs3931397	0.85[ASN][1000 genomes]
rs57616130	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61757920	0.82[ASN][1000 genomes]
rs62332226	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6811001	0.84[ASN][1000 genomes]
rs6816503	0.84[ASN][1000 genomes]
rs7670173	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7670229	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9994070	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9994262	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv293429	chr4:149051993-149055794	Weak transcription Enhancers Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149018000-149085800	Weak transcription	Stomach Mucosa	stomach
2	chr4:149024000-149068600	Weak transcription	Right Ventricle	heart
3	chr4:149030800-149067000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr4:149039400-149069400	Weak transcription	Colonic Mucosa	Colon
5	chr4:149040600-149083200	Weak transcription	Gastric	stomach
6	chr4:149041400-149067600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:149041400-149092000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr4:149041600-149061400	Weak transcription	Fetal Stomach	stomach
9	chr4:149041600-149069600	Weak transcription	Brain Anterior Caudate	brain
10	chr4:149041800-149074400	Weak transcription	Lung	lung
11	chr4:149045600-149104800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr4:149046400-149076600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr4:149046400-149085800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr4:149046600-149055400	Weak transcription	Brain Substantia Nigra	brain
15	chr4:149046600-149066600	Weak transcription	Ovary	ovary
16	chr4:149046600-149075600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr4:149046600-149087400	Weak transcription	Aorta	Aorta
18	chr4:149047000-149066800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr4:149047000-149077200	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr4:149047400-149062600	Weak transcription	Fetal Muscle Leg	muscle
21	chr4:149047400-149066000	Weak transcription	Pancreas	Pancrea
22	chr4:149047400-149067200	Weak transcription	Left Ventricle	heart
23	chr4:149047400-149083800	Weak transcription	Small Intestine	intestine
24	chr4:149048800-149066600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr4:149049000-149066000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr4:149049400-149083000	Weak transcription	Fetal Intestine Large	intestine
27	chr4:149049600-149072800	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr4:149050000-149060000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr4:149050000-149065800	Weak transcription	Liver	Liver
30	chr4:149050400-149059200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr4:149050600-149056200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr4:149051800-149066800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr4:149052200-149053000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr4:149052600-149054000	Weak transcription	Psoas Muscle	Psoas
35	chr4:149052800-149054000	Enhancers	Fetal Heart	heart

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