Variant report

Variant	rs10023128
Chromosome Location	chr4:149045770-149045771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10023233	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10031194	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs10519942	0.85[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap]
rs11725360	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11726122	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11729617	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11731400	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17024404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17024408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17024437	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17024443	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17620330	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs1879827	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2293162	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs28367185	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28368806	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3931397	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs57616130	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62332226	0.88[AMR][1000 genomes]
rs6535580	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs6535581	0.86[JPT][hapmap]
rs6811001	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6816503	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7670173	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7670229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9994070	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994262	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10023128	ABLIM2	trans	cerebellum	SCAN
rs10023128	POU4F2	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149004600-149052400	Weak transcription	Esophagus	oesophagus
2	chr4:149018000-149085800	Weak transcription	Stomach Mucosa	stomach
3	chr4:149024000-149068600	Weak transcription	Right Ventricle	heart
4	chr4:149030800-149067000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:149033800-149047000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr4:149035400-149045800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:149035400-149048200	Weak transcription	Brain Angular Gyrus	brain
8	chr4:149039400-149069400	Weak transcription	Colonic Mucosa	Colon
9	chr4:149040600-149083200	Weak transcription	Gastric	stomach
10	chr4:149041400-149067600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:149041400-149092000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr4:149041600-149047200	Weak transcription	Pancreas	Pancrea
13	chr4:149041600-149061400	Weak transcription	Fetal Stomach	stomach
14	chr4:149041600-149069600	Weak transcription	Brain Anterior Caudate	brain
15	chr4:149041800-149074400	Weak transcription	Lung	lung
16	chr4:149042000-149046400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr4:149044200-149046400	ZNF genes & repeats	Adipose Nuclei	Adipose
18	chr4:149044600-149046600	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
19	chr4:149044800-149047400	ZNF genes & repeats	Liver	Liver
20	chr4:149045400-149047400	ZNF genes & repeats	Fetal Muscle Leg	muscle
21	chr4:149045600-149104800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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