Variant report

Variant	rs17024443
Chromosome Location	chr4:149086079-149086080
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10023128	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10031194	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs10519942	0.85[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs11725360	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11729617	0.82[ASN][1000 genomes]
rs17024404	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17024408	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs17024437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17620330	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1879827	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2293162	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs28367185	0.93[ASN][1000 genomes]
rs28368806	0.96[ASN][1000 genomes]
rs28789690	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3846299	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3931397	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57616130	0.93[ASN][1000 genomes]
rs61757920	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62331988	0.89[ASN][1000 genomes]
rs62332226	0.96[ASN][1000 genomes]
rs6535580	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs6535581	0.86[JPT][hapmap]
rs6811001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6816503	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7670173	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs7670229	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149041400-149092000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr4:149045600-149104800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:149046600-149087400	Weak transcription	Aorta	Aorta
4	chr4:149055000-149087400	Weak transcription	Psoas Muscle	Psoas
5	chr4:149063000-149087400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:149067600-149087400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:149068000-149097400	Weak transcription	Spleen	Spleen
8	chr4:149068200-149087400	Weak transcription	Esophagus	oesophagus
9	chr4:149069200-149087400	Weak transcription	Adipose Nuclei	Adipose
10	chr4:149076000-149088200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr4:149076000-149094600	Weak transcription	Fetal Stomach	stomach
12	chr4:149081800-149086800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr4:149083000-149086200	Enhancers	Fetal Intestine Large	intestine
14	chr4:149083000-149088600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr4:149083200-149087400	Weak transcription	Right Ventricle	heart
16	chr4:149083400-149086200	Enhancers	Fetal Kidney	kidney
17	chr4:149084000-149087400	Weak transcription	Right Atrium	heart
18	chr4:149084000-149092200	Weak transcription	Gastric	stomach
19	chr4:149084000-149094400	Weak transcription	Pancreas	Pancrea
20	chr4:149084000-149106200	Weak transcription	Lung	lung
21	chr4:149084400-149086200	Enhancers	Duodenum Mucosa	Duodenum
22	chr4:149084600-149086200	Enhancers	Small Intestine	intestine
23	chr4:149084800-149087200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr4:149084800-149087600	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr4:149085200-149088000	Enhancers	Colon Smooth Muscle	Colon
26	chr4:149085200-149092000	Weak transcription	HMEC	breast
27	chr4:149085200-149092400	Weak transcription	Fetal Heart	heart
28	chr4:149085400-149086200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr4:149085400-149091200	Weak transcription	NHEK	skin
30	chr4:149085400-149092800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr4:149085600-149086200	Enhancers	Fetal Intestine Small	intestine
32	chr4:149085800-149086200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr4:149085800-149086200	Enhancers	Ovary	ovary
34	chr4:149085800-149086200	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr4:149085800-149086200	Enhancers	Stomach Mucosa	stomach
36	chr4:149085800-149086200	Enhancers	HSMMtube	muscle
37	chr4:149085800-149086400	Enhancers	Liver	Liver
38	chr4:149085800-149086400	Enhancers	Fetal Muscle Leg	muscle
39	chr4:149085800-149086400	Enhancers	Rectal Smooth Muscle	rectum
40	chr4:149085800-149086400	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr4:149085800-149087400	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr4:149085800-149087600	Enhancers	Rectal Mucosa Donor 29	rectum
43	chr4:149086000-149086200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr4:149086000-149086200	Enhancers	Brain Cingulate Gyrus	brain
45	chr4:149086000-149086200	Enhancers	Left Ventricle	heart
46	chr4:149086000-149087200	Weak transcription	Brain Anterior Caudate	brain
47	chr4:149086000-149091400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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