Variant report

Variant	rs1879827
Chromosome Location	chr4:149025406-149025407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10023128	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs10031194	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.80[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10031538	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11725360	0.86[JPT][hapmap]
rs11946576	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17024380	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17024404	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs17024408	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs17024437	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs17024443	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs17620330	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2293162	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3931397	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs6535580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6535581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6811001	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs6816503	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs7670173	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs7670229	0.82[CHB][hapmap];0.86[JPT][hapmap]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148992200-149035000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:148997800-149028800	Weak transcription	Pancreas	Pancrea
3	chr4:148998400-149032600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr4:148999200-149029600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr4:149002200-149029400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr4:149002600-149036600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr4:149003000-149028800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr4:149003000-149029200	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr4:149003400-149027200	Weak transcription	Fetal Intestine Large	intestine
10	chr4:149003800-149029400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr4:149004000-149029200	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr4:149004600-149052400	Weak transcription	Esophagus	oesophagus
13	chr4:149012600-149029600	Weak transcription	Colonic Mucosa	Colon
14	chr4:149012600-149037400	Weak transcription	NHLF	lung
15	chr4:149013200-149034800	Weak transcription	Brain Angular Gyrus	brain
16	chr4:149013400-149025600	Weak transcription	Adipose Nuclei	Adipose
17	chr4:149013400-149028800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr4:149013600-149029400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr4:149013600-149034600	Weak transcription	Brain Hippocampus Middle	brain
20	chr4:149014400-149029600	Weak transcription	Spleen	Spleen
21	chr4:149014600-149029400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr4:149014600-149029400	Weak transcription	Lung	lung
23	chr4:149015400-149029600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr4:149015600-149037600	Weak transcription	Colon Smooth Muscle	Colon
25	chr4:149016600-149026400	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr4:149017000-149029800	Weak transcription	Ovary	ovary
27	chr4:149018000-149085800	Weak transcription	Stomach Mucosa	stomach
28	chr4:149020600-149029800	Weak transcription	Aorta	Aorta
29	chr4:149020800-149042400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr4:149022400-149042600	Weak transcription	Small Intestine	intestine
31	chr4:149022800-149034600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr4:149023000-149026400	Strong transcription	Duodenum Mucosa	Duodenum
33	chr4:149023000-149026400	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr4:149023000-149026600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr4:149023400-149026200	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr4:149023400-149029600	Weak transcription	Brain Cingulate Gyrus	brain
37	chr4:149023400-149034800	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr4:149023800-149026200	Strong transcription	Fetal Muscle Leg	muscle
39	chr4:149023800-149026200	Enhancers	Left Ventricle	heart
40	chr4:149024000-149041000	Weak transcription	Fetal Kidney	kidney
41	chr4:149024000-149068600	Weak transcription	Right Ventricle	heart
42	chr4:149024200-149029600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr4:149024400-149030200	Weak transcription	Liver	Liver
44	chr4:149024600-149030200	Weak transcription	Fetal Intestine Small	intestine
45	chr4:149024600-149040200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr4:149024800-149025800	Weak transcription	Rectal Smooth Muscle	rectum
47	chr4:149024800-149026000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr4:149024800-149028800	Weak transcription	Stomach Smooth Muscle	stomach
49	chr4:149024800-149029400	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr4:149024800-149039000	Weak transcription	Gastric	stomach

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