Variant report

Variant	rs7670173
Chromosome Location	chr4:149063380-149063381
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10023128	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10023233	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10031194	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs10519942	0.85[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs11725360	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11726122	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11729617	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11731400	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17024404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17024408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17024437	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[ASN][1000 genomes]
rs17024443	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs17620330	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1879827	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2293162	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs28367185	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28368806	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28789690	1.00[ASN][1000 genomes]
rs3846299	1.00[ASN][1000 genomes]
rs3931397	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57616130	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61757920	0.96[ASN][1000 genomes]
rs62331988	0.86[ASN][1000 genomes]
rs62332226	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6535580	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs6535581	0.86[JPT][hapmap]
rs6811001	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6816503	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7670229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994070	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9994262	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7670173	ABLIM2	trans	cerebellum	SCAN

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149018000-149085800	Weak transcription	Stomach Mucosa	stomach
2	chr4:149024000-149068600	Weak transcription	Right Ventricle	heart
3	chr4:149030800-149067000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr4:149039400-149069400	Weak transcription	Colonic Mucosa	Colon
5	chr4:149040600-149083200	Weak transcription	Gastric	stomach
6	chr4:149041400-149067600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:149041400-149092000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr4:149041600-149069600	Weak transcription	Brain Anterior Caudate	brain
9	chr4:149041800-149074400	Weak transcription	Lung	lung
10	chr4:149045600-149104800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr4:149046400-149076600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr4:149046400-149085800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr4:149046600-149066600	Weak transcription	Ovary	ovary
14	chr4:149046600-149075600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr4:149046600-149087400	Weak transcription	Aorta	Aorta
16	chr4:149047000-149066800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr4:149047000-149077200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr4:149047400-149066000	Weak transcription	Pancreas	Pancrea
19	chr4:149047400-149067200	Weak transcription	Left Ventricle	heart
20	chr4:149047400-149083800	Weak transcription	Small Intestine	intestine
21	chr4:149048800-149066600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr4:149049000-149066000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr4:149049400-149083000	Weak transcription	Fetal Intestine Large	intestine
24	chr4:149049600-149072800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr4:149050000-149065800	Weak transcription	Liver	Liver
26	chr4:149051800-149066800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr4:149053000-149066000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr4:149055000-149066400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr4:149055000-149066400	Weak transcription	Adipose Nuclei	Adipose
30	chr4:149055000-149073600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr4:149055000-149087400	Weak transcription	Psoas Muscle	Psoas
32	chr4:149055600-149067400	Weak transcription	Brain Hippocampus Middle	brain
33	chr4:149060200-149067400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr4:149060800-149067200	Weak transcription	Esophagus	oesophagus
35	chr4:149061000-149066000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr4:149061600-149063600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr4:149061800-149067400	Weak transcription	Fetal Stomach	stomach
38	chr4:149062600-149075600	Weak transcription	Colon Smooth Muscle	Colon
39	chr4:149063000-149064400	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr4:149063000-149076400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr4:149063000-149087400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr4:149063200-149064600	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr4:149063200-149065800	Weak transcription	Fetal Muscle Leg	muscle
44	chr4:149063200-149077000	Weak transcription	Primary B cells from peripheral blood	blood
45	chr4:149063200-149085600	Weak transcription	Fetal Intestine Small	intestine

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