Variant report

Variant	rs11731400
Chromosome Location	chr4:149038730-149038731
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10023128	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023233	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726122	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11729617	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17024404	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17024408	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28367185	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28368806	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57616130	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62332226	0.91[AMR][1000 genomes]
rs7670173	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7670229	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9994070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994262	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149004600-149052400	Weak transcription	Esophagus	oesophagus
2	chr4:149018000-149085800	Weak transcription	Stomach Mucosa	stomach
3	chr4:149020800-149042400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr4:149022400-149042600	Weak transcription	Small Intestine	intestine
5	chr4:149024000-149041000	Weak transcription	Fetal Kidney	kidney
6	chr4:149024000-149068600	Weak transcription	Right Ventricle	heart
7	chr4:149024600-149040200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr4:149024800-149039000	Weak transcription	Gastric	stomach
9	chr4:149026200-149039200	Weak transcription	Psoas Muscle	Psoas
10	chr4:149026200-149042000	Weak transcription	Fetal Heart	heart
11	chr4:149026200-149044600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr4:149028400-149044200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr4:149030600-149038800	Weak transcription	Colonic Mucosa	Colon
14	chr4:149030600-149039400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr4:149030800-149039000	Weak transcription	Pancreas	Pancrea
16	chr4:149030800-149039200	Weak transcription	Brain Anterior Caudate	brain
17	chr4:149030800-149067000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr4:149031200-149044400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr4:149031600-149043400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr4:149033800-149047000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr4:149035000-149043600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr4:149035200-149042600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr4:149035400-149039000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr4:149035400-149040000	Weak transcription	Spleen	Spleen
25	chr4:149035400-149044200	Weak transcription	Brain Substantia Nigra	brain
26	chr4:149035400-149045800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr4:149035400-149048200	Weak transcription	Brain Angular Gyrus	brain
28	chr4:149035600-149039800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr4:149035600-149040000	Weak transcription	Brain Hippocampus Middle	brain
30	chr4:149035800-149039000	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr4:149035800-149039000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr4:149035800-149039200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr4:149036200-149039000	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr4:149037400-149038800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr4:149037600-149039000	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr4:149037600-149040400	Enhancers	Fetal Muscle Leg	muscle
37	chr4:149037800-149039400	Weak transcription	Fetal Intestine Small	intestine
38	chr4:149037800-149039800	Weak transcription	Adipose Nuclei	Adipose
39	chr4:149037800-149042600	Weak transcription	NHLF	lung
40	chr4:149038000-149038800	Weak transcription	Liver	Liver
41	chr4:149038000-149039200	Weak transcription	HSMMtube	muscle
42	chr4:149038000-149040000	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr4:149038000-149041200	Weak transcription	NHDF-Ad	bronchial
44	chr4:149038000-149044200	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr4:149038200-149039400	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr4:149038200-149039400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr4:149038200-149041600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr4:149038200-149043200	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr4:149038400-149039200	Genic enhancers	Fetal Muscle Trunk	muscle
50	chr4:149038400-149040400	Weak transcription	Ovary	ovary

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