Variant report

Variant	rs6535580
Chromosome Location	chr4:149022210-149022211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10023128	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs10031194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10031538	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11725360	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs11946576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17024380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17024404	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs17024408	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs17024437	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs17024443	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs17620330	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs1879827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2293162	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3931397	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs6535581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6811001	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs6816503	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs7670173	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs7670229	0.85[CHB][hapmap];0.86[JPT][hapmap]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148992200-149035000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:148997800-149028800	Weak transcription	Pancreas	Pancrea
3	chr4:148998400-149032600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr4:148999200-149029600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr4:148999600-149024400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:149002200-149029400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr4:149002600-149036600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr4:149003000-149028800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr4:149003000-149029200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr4:149003200-149025400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr4:149003400-149027200	Weak transcription	Fetal Intestine Large	intestine
12	chr4:149003800-149029400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr4:149004000-149029200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr4:149004600-149052400	Weak transcription	Esophagus	oesophagus
15	chr4:149012600-149029600	Weak transcription	Colonic Mucosa	Colon
16	chr4:149012600-149037400	Weak transcription	NHLF	lung
17	chr4:149013000-149024400	Weak transcription	Gastric	stomach
18	chr4:149013200-149034800	Weak transcription	Brain Angular Gyrus	brain
19	chr4:149013400-149025600	Weak transcription	Adipose Nuclei	Adipose
20	chr4:149013400-149028800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr4:149013600-149029400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr4:149013600-149034600	Weak transcription	Brain Hippocampus Middle	brain
23	chr4:149014200-149023000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr4:149014400-149023400	Weak transcription	Fetal Intestine Small	intestine
25	chr4:149014400-149029600	Weak transcription	Spleen	Spleen
26	chr4:149014600-149023200	Weak transcription	Fetal Stomach	stomach
27	chr4:149014600-149029400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr4:149014600-149029400	Weak transcription	Lung	lung
29	chr4:149015200-149023000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr4:149015400-149029600	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr4:149015600-149023200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr4:149015600-149037600	Weak transcription	Colon Smooth Muscle	Colon
33	chr4:149016600-149026400	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr4:149017000-149023400	Weak transcription	Right Ventricle	heart
35	chr4:149017000-149023600	Weak transcription	Left Ventricle	heart
36	chr4:149017000-149029800	Weak transcription	Ovary	ovary
37	chr4:149018000-149085800	Weak transcription	Stomach Mucosa	stomach
38	chr4:149019600-149023800	Weak transcription	Fetal Muscle Leg	muscle
39	chr4:149020000-149023000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr4:149020400-149023400	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr4:149020400-149024000	Weak transcription	Fetal Heart	heart
42	chr4:149020600-149023000	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr4:149020600-149029800	Weak transcription	Aorta	Aorta
44	chr4:149020800-149042400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr4:149021000-149023600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr4:149022200-149023400	Enhancers	Pancreatic Islets	Pancreatic Islet
47	chr4:149022200-149024400	Strong transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links