Variant report

Variant	rs61762008
Chromosome Location	chr11:17156183-17156184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17154024..17158946-chr11:17185264..17188139,4	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11820353	1.00[AMR][1000 genomes]
rs11822493	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11824930	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11827369	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3168295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59205361	1.00[AMR][1000 genomes]
rs61762012	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7126409	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7126602	1.00[AMR][1000 genomes]
rs7129134	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7130328	1.00[AMR][1000 genomes]
rs73431296	1.00[AMR][1000 genomes]
rs73431299	1.00[AMR][1000 genomes]
rs73433220	1.00[AMR][1000 genomes]
rs73433223	1.00[AMR][1000 genomes]
rs73433232	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433242	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435334	1.00[AMR][1000 genomes]
rs73435367	1.00[AMR][1000 genomes]
rs7933318	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv7691	chr11:17151593-17196894	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17100400-17157200	Weak transcription	Fetal Heart	heart
2	chr11:17105400-17172800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:17106800-17156600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:17107000-17167200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:17108200-17177400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:17108600-17172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:17109800-17158400	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:17111600-17182000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr11:17111800-17157800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:17120400-17157800	Weak transcription	Stomach Mucosa	stomach
11	chr11:17120400-17181600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr11:17120800-17156200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:17120800-17166200	Weak transcription	Pancreas	Pancrea
14	chr11:17120800-17171800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:17120800-17172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:17121000-17178000	Weak transcription	Psoas Muscle	Psoas
17	chr11:17125400-17172200	Weak transcription	Fetal Brain Male	brain
18	chr11:17125800-17181400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr11:17126800-17186400	Weak transcription	Colonic Mucosa	Colon
20	chr11:17129800-17158200	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr11:17130200-17174600	Weak transcription	Spleen	Spleen
22	chr11:17130200-17203800	Weak transcription	Aorta	Aorta
23	chr11:17132000-17167800	Weak transcription	Right Ventricle	heart
24	chr11:17132200-17156200	Weak transcription	HSMMtube	muscle
25	chr11:17132200-17163200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr11:17139000-17171200	Weak transcription	Fetal Brain Female	brain
27	chr11:17140000-17183400	Weak transcription	Small Intestine	intestine
28	chr11:17142800-17156600	Strong transcription	Liver	Liver
29	chr11:17143000-17163800	Weak transcription	Gastric	stomach
30	chr11:17144200-17192800	Weak transcription	NHDF-Ad	bronchial
31	chr11:17144600-17166600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr11:17147800-17158000	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr11:17148000-17158000	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr11:17148400-17158000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:17148800-17158200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr11:17149400-17157600	Strong transcription	Duodenum Mucosa	Duodenum
37	chr11:17149400-17157800	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr11:17149400-17158000	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr11:17149400-17158200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:17149400-17158200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:17149600-17156600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:17149600-17156600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:17149800-17157400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:17149800-17158000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:17149800-17158000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr11:17149800-17158200	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr11:17150800-17156200	Weak transcription	Brain Germinal Matrix	brain
48	chr11:17150800-17156400	Weak transcription	K562	blood
49	chr11:17150800-17165800	Weak transcription	HMEC	breast
50	chr11:17150800-17172000	Weak transcription	Brain Inferior Temporal Lobe	brain

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