Variant report

Variant	rs73433232
Chromosome Location	chr11:17111966-17111967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17098841..17101190-chr11:17109242..17112099,4	K562	blood:

Variant related genes	Relation type
ENSG00000110700	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11820353	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822493	1.00[AMR][1000 genomes]
rs11824930	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11827369	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3168295	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59205361	1.00[AMR][1000 genomes]
rs61762008	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61762012	1.00[AMR][1000 genomes]
rs7126409	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7126602	1.00[AMR][1000 genomes]
rs7129134	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7130328	1.00[AMR][1000 genomes]
rs73431296	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431299	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433220	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433223	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433242	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435334	1.00[AMR][1000 genomes]
rs73435367	1.00[AMR][1000 genomes]
rs7933318	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17100000-17112800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr11:17100000-17112800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:17100200-17112200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:17100200-17112400	Weak transcription	Psoas Muscle	Psoas
5	chr11:17100200-17112600	Weak transcription	NHLF	lung
6	chr11:17100200-17113200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:17100200-17115000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr11:17100400-17112400	Weak transcription	Fetal Brain Female	brain
9	chr11:17100400-17112400	Weak transcription	Right Ventricle	heart
10	chr11:17100400-17112800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:17100400-17119200	Weak transcription	Esophagus	oesophagus
12	chr11:17100400-17119200	Weak transcription	Pancreas	Pancrea
13	chr11:17100400-17119800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:17100400-17157200	Weak transcription	Fetal Heart	heart
15	chr11:17100600-17112200	Weak transcription	Small Intestine	intestine
16	chr11:17100600-17112400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:17100600-17113000	Weak transcription	Thymus	Thymus
18	chr11:17100600-17115000	Weak transcription	Spleen	Spleen
19	chr11:17100600-17124200	Weak transcription	Fetal Brain Male	brain
20	chr11:17100800-17119600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:17101600-17145000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:17102200-17112800	Weak transcription	K562	blood
23	chr11:17105400-17172800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:17106800-17156600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:17107000-17167200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:17107800-17147200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:17108000-17113800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:17108200-17116800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:17108200-17141400	Strong transcription	Liver	Liver
30	chr11:17108200-17177400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:17108400-17113800	Strong transcription	Primary B cells from cord blood	blood
32	chr11:17108400-17117000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:17108600-17113000	Strong transcription	HUVEC	blood vessel
34	chr11:17108600-17172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr11:17108800-17126800	Strong transcription	Osteobl	bone
36	chr11:17109000-17113800	Strong transcription	NHDF-Ad	bronchial
37	chr11:17109000-17114200	Strong transcription	Brain Anterior Caudate	brain
38	chr11:17109000-17116400	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr11:17109000-17116800	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr11:17109000-17117000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr11:17109000-17117000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr11:17109000-17121600	Strong transcription	Adipose Nuclei	Adipose
43	chr11:17109000-17121800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr11:17109200-17115800	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr11:17109200-17116800	Strong transcription	Duodenum Mucosa	Duodenum
46	chr11:17109200-17144600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:17109400-17113200	Strong transcription	Primary hematopoietic stem cells	blood
48	chr11:17109400-17113600	Strong transcription	Colon Smooth Muscle	Colon
49	chr11:17109400-17116800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:17109400-17128600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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