Variant report

Variant	rs73435334
Chromosome Location	chr11:17251913-17251914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17251318..17252261-chr11:17405052..17406043,5	MCF-7	breast:
2	chr11:17251351..17251972-chr11:17410334..17410928,2	MCF-7	breast:
3	chr11:17251256..17252008-chr11:17375735..17376626,3	MCF-7	breast:
4	chr11:17251338..17252303-chr11:17525826..17526790,3	K562	blood:
5	chr11:17251431..17252316-chr11:17372886..17373548,2	MCF-7	breast:
6	chr11:17251345..17252271-chr11:17549390..17549954,2	K562	blood:

Variant related genes	Relation type
ENSG00000187486	Chromatin interaction
ENSG00000188211	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11820353	1.00[AMR][1000 genomes]
rs11822493	1.00[AMR][1000 genomes]
rs11824930	1.00[AMR][1000 genomes]
rs11827369	1.00[AMR][1000 genomes]
rs3168295	1.00[AMR][1000 genomes]
rs59205361	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61762008	1.00[AMR][1000 genomes]
rs61762012	1.00[AMR][1000 genomes]
rs7126409	1.00[AMR][1000 genomes]
rs7126602	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7129134	1.00[AMR][1000 genomes]
rs7130328	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431296	1.00[AMR][1000 genomes]
rs73431299	1.00[AMR][1000 genomes]
rs73433220	1.00[AMR][1000 genomes]
rs73433223	1.00[AMR][1000 genomes]
rs73433232	1.00[AMR][1000 genomes]
rs73433242	1.00[AMR][1000 genomes]
rs73435367	1.00[AMR][1000 genomes]
rs7933318	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv469762	chr11:17170690-17320691	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv482905	chr11:17170690-17320691	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv975155	chr11:17247352-17252105	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17244400-17252000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:17250000-17252200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:17251000-17252000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:17251200-17252200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:17251600-17252000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:17251600-17252000	Enhancers	Right Atrium	heart
7	chr11:17251600-17252200	Enhancers	Duodenum Mucosa	Duodenum
8	chr11:17251600-17252200	Enhancers	Fetal Thymus	thymus
9	chr11:17251600-17253200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr11:17251800-17252000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:17251800-17252000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:17251800-17252000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:17251800-17252000	Enhancers	Brain Hippocampus Middle	brain
14	chr11:17251800-17252000	Enhancers	Brain Substantia Nigra	brain
15	chr11:17251800-17252000	Enhancers	Fetal Lung	lung
16	chr11:17251800-17252000	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr11:17251800-17252000	Flanking Active TSS	A549	lung
18	chr11:17251800-17252000	Active TSS	Osteobl	bone
19	chr11:17251800-17252200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:17251800-17252200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr11:17251800-17252200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
22	chr11:17251800-17252200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:17251800-17252200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:17251800-17252200	Active TSS	Muscle Satellite Cultured Cells	--
25	chr11:17251800-17252200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
26	chr11:17251800-17252200	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr11:17251800-17252200	Active TSS	Brain Anterior Caudate	brain
28	chr11:17251800-17252200	Active TSS	Fetal Muscle Leg	muscle
29	chr11:17251800-17252200	Flanking Active TSS	Dnd41	blood
30	chr11:17251800-17252200	Flanking Active TSS	GM12878-XiMat	blood
31	chr11:17251800-17252200	Flanking Active TSS	Hela-S3	cervix
32	chr11:17251800-17252200	Flanking Active TSS	HUVEC	blood vessel
33	chr11:17251800-17252200	Active TSS	NHDF-Ad	bronchial
34	chr11:17251800-17252200	Flanking Active TSS	NHEK	skin
35	chr11:17251800-17252200	Active TSS	NHLF	lung
36	chr11:17251800-17252400	Enhancers	Primary T cells fromperipheralblood	blood
37	chr11:17251800-17252600	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr11:17251800-17252600	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr11:17251800-17252600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr11:17251800-17252600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr11:17251800-17252800	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr11:17251800-17252800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr11:17251800-17253200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr11:17251800-17253400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr11:17251800-17253600	Enhancers	Primary B cells from peripheral blood	blood

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