Variant report

Variant	rs7126602
Chromosome Location	chr11:17264708-17264709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11820353	1.00[AMR][1000 genomes]
rs11822493	1.00[AMR][1000 genomes]
rs11824930	1.00[AMR][1000 genomes]
rs11827369	1.00[AMR][1000 genomes]
rs3168295	1.00[AMR][1000 genomes]
rs59205361	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61762008	1.00[AMR][1000 genomes]
rs61762012	1.00[AMR][1000 genomes]
rs7126409	1.00[AMR][1000 genomes]
rs7129134	1.00[AMR][1000 genomes]
rs7130328	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431296	1.00[AMR][1000 genomes]
rs73431299	1.00[AMR][1000 genomes]
rs73433220	1.00[AMR][1000 genomes]
rs73433223	1.00[AMR][1000 genomes]
rs73433232	1.00[AMR][1000 genomes]
rs73433242	1.00[AMR][1000 genomes]
rs73435334	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435367	1.00[AMR][1000 genomes]
rs7933318	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv469762	chr11:17170690-17320691	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv482905	chr11:17170690-17320691	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17262600-17265000	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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