Variant report

Variant	rs61799496
Chromosome Location	chr1:93691734-93691735
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11164876	0.81[ASN][1000 genomes]
rs11164880	0.86[ASN][1000 genomes]
rs11164885	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11164897	0.94[EUR][1000 genomes]
rs11164908	0.94[EUR][1000 genomes]
rs12030843	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12031709	0.94[EUR][1000 genomes]
rs12031765	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12038046	0.86[ASN][1000 genomes]
rs12044557	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12044657	0.82[ASN][1000 genomes]
rs12048219	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12130734	0.80[ASN][1000 genomes]
rs12405487	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12563120	0.94[EUR][1000 genomes]
rs12566752	0.94[EUR][1000 genomes]
rs1537758	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1967721	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2255722	0.83[ASN][1000 genomes]
rs2391251	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2484486	0.86[ASN][1000 genomes]
rs2765545	0.80[ASN][1000 genomes]
rs2783489	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2783490	0.80[ASN][1000 genomes]
rs2783493	0.82[ASN][1000 genomes]
rs2783495	0.83[ASN][1000 genomes]
rs2783496	0.83[ASN][1000 genomes]
rs2783497	0.83[ASN][1000 genomes]
rs2783499	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2783500	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2783501	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2783504	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2783505	0.87[ASN][1000 genomes]
rs2815406	0.80[ASN][1000 genomes]
rs2815415	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3904665	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4484937	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4847235	0.81[ASN][1000 genomes]
rs58354545	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs612037	0.82[ASN][1000 genomes]
rs61266405	0.90[EUR][1000 genomes]
rs61799470	0.86[ASN][1000 genomes]
rs61799500	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61799516	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs624131	0.82[ASN][1000 genomes]
rs627779	0.80[ASN][1000 genomes]
rs6541349	0.92[EUR][1000 genomes]
rs6676902	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6684908	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72959220	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7513705	0.86[ASN][1000 genomes]
rs7532195	0.80[ASN][1000 genomes]
rs7535628	0.86[ASN][1000 genomes]
rs7539307	0.86[ASN][1000 genomes]
rs797661	0.82[ASN][1000 genomes]
rs797676	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830625	chr1:93566378-93735246	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93647000-93756400	Weak transcription	Gastric	stomach
2	chr1:93647200-93707400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr1:93647200-93757600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:93647600-93706600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:93654200-93708400	Weak transcription	Esophagus	oesophagus
6	chr1:93654600-93708000	Weak transcription	Ovary	ovary
7	chr1:93657600-93708400	Weak transcription	Left Ventricle	heart
8	chr1:93660600-93705200	Weak transcription	Lung	lung
9	chr1:93661400-93708200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr1:93661800-93702800	Weak transcription	Fetal Heart	heart
11	chr1:93661800-93708200	Weak transcription	Fetal Brain Female	brain
12	chr1:93663600-93705600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr1:93665400-93708400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr1:93665400-93708400	Weak transcription	Spleen	Spleen
15	chr1:93665600-93697600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:93665600-93702600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr1:93665600-93707800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr1:93665800-93693200	Weak transcription	Fetal Intestine Small	intestine
19	chr1:93665800-93706600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr1:93665800-93707800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr1:93666600-93727000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr1:93667400-93695400	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr1:93668800-93695200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr1:93668800-93697600	Weak transcription	Fetal Intestine Large	intestine
25	chr1:93668800-93708400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr1:93672200-93693200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr1:93672600-93708400	Weak transcription	Placenta	Placenta
28	chr1:93673800-93707400	Weak transcription	A549	lung
29	chr1:93674600-93692200	Weak transcription	Fetal Stomach	stomach
30	chr1:93675000-93693000	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr1:93678000-93695200	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr1:93682000-93704000	Weak transcription	Psoas Muscle	Psoas
33	chr1:93682400-93708800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr1:93682600-93691800	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr1:93683000-93692000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr1:93684000-93703200	Weak transcription	Hela-S3	cervix
37	chr1:93684600-93702600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr1:93684800-93708400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr1:93685200-93702800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr1:93685200-93705400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr1:93685200-93707400	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr1:93685400-93692000	Weak transcription	Thymus	Thymus
43	chr1:93685400-93693800	Weak transcription	Liver	Liver
44	chr1:93685400-93697000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr1:93685400-93700200	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr1:93685400-93708400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr1:93685600-93692800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr1:93685600-93708400	Weak transcription	NH-A	brain
49	chr1:93685600-93709200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr1:93685800-93695200	Strong transcription	Fetal Thymus	thymus

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