Variant report

Variant	rs61803566
Chromosome Location	chr1:153699235-153699236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr1:153699235-153701302	SK-N-SH	brain:	n/a	chr1:153700610-153700624 chr1:153700480-153700487

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:153641515..153644992-chr1:153698475..153702164,4	MCF-7	breast:
2	chr1:153690798..153692537-chr1:153698848..153701656,2	K562	blood:
3	chr1:153697814..153700454-chr1:153732023..153734328,2	K562	blood:
4	chr1:153698814..153704322-chr1:153719587..153724035,6	MCF-7	breast:
5	chr1:153651109..153660855-chr1:153698392..153702896,14	MCF-7	breast:
6	chr1:153698690..153700726-chr1:153934650..153936976,2	MCF-7	breast:
7	chr1:153641911..153645780-chr1:153697153..153701509,4	MCF-7	breast:
8	chr1:153536608..153541746-chr1:153698648..153702694,5	MCF-7	breast:
9	chr1:153599788..153602388-chr1:153699187..153702024,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000199565	TF binding region
INTS3	TF binding region
ENSG00000189171	Chromatin interaction
ENSG00000169418	Chromatin interaction
ENSG00000235015	Chromatin interaction
ENSG00000243613	Chromatin interaction
ENSG00000196754	Chromatin interaction
ENSG00000143624	Chromatin interaction
ENSG00000160678	Chromatin interaction
ENSG00000143621	Chromatin interaction
ENSG00000143570	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11264299	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11264336	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1132619	0.85[EUR][1000 genomes]
rs12062022	0.88[EUR][1000 genomes]
rs12068901	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12070179	0.88[EUR][1000 genomes]
rs12070559	0.87[EUR][1000 genomes]
rs12071801	0.87[EUR][1000 genomes]
rs12076697	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12097043	0.88[EUR][1000 genomes]
rs12097583	0.88[EUR][1000 genomes]
rs28730729	1.00[ASN][1000 genomes]
rs28730731	1.00[ASN][1000 genomes]
rs35240348	1.00[ASN][1000 genomes]
rs36064263	0.85[EUR][1000 genomes]
rs3891075	1.00[ASN][1000 genomes]
rs4073768	0.88[EUR][1000 genomes]
rs41265168	1.00[ASN][1000 genomes]
rs41265191	0.88[EUR][1000 genomes]
rs4845359	1.00[ASN][1000 genomes]
rs55658698	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55778008	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56167936	0.85[EUR][1000 genomes]
rs56910871	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57314764	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57482283	1.00[ASN][1000 genomes]
rs60100741	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60316596	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60827720	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61803563	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61803565	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61803567	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61803571	1.00[ASN][1000 genomes]
rs61803573	0.88[EUR][1000 genomes]
rs61805738	1.00[ASN][1000 genomes]
rs61806710	1.00[ASN][1000 genomes]
rs61806714	1.00[ASN][1000 genomes]
rs61806719	1.00[ASN][1000 genomes]
rs6427085	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660232	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6663011	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6663988	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6668229	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6672371	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6682411	0.85[EUR][1000 genomes]
rs6687602	0.92[EUR][1000 genomes]
rs6689176	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74115713	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7512561	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7515716	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7520045	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7520235	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7533987	1.00[ASN][1000 genomes]
rs7556155	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7556379	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7556575	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8532	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv547928	chr1:153612133-153714252	Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2830411	chr1:153613393-153725007	Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv1067771	chr1:153613593-153724866	Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	nsv530052	chr1:153613593-153724866	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
5	nsv1005818	chr1:153613597-153724980	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
6	nsv535173	chr1:153613597-153724980	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
7	nsv1007835	chr1:153613597-153729959	Genic enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
8	nsv535174	chr1:153613597-153729959	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
9	nsv1011897	chr1:153613597-153836703	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
10	nsv464028	chr1:153622220-153723037	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
11	nsv547929	chr1:153622220-153723037	Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
12	nsv999364	chr1:153622634-154419436	Strong transcription Genic enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
13	nsv535175	chr1:153622634-154419436	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
14	nsv1001312	chr1:153622834-153724867	Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
15	nsv535176	chr1:153622834-153724867	Active TSS Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
16	nsv531892	chr1:153671910-153954090	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
17	nsv1002328	chr1:153672031-153718746	Flanking Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61803566	SLC27A3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:153687400-153699800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:153697800-153699800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:153697800-153699800	Enhancers	Fetal Kidney	kidney
4	chr1:153697800-153700000	Weak transcription	Right Atrium	heart
5	chr1:153698000-153699800	Enhancers	HepG2	liver
6	chr1:153698200-153699400	Weak transcription	Pancreas	Pancrea
7	chr1:153698600-153699800	Enhancers	A549	lung
8	chr1:153698600-153699800	Enhancers	Hela-S3	cervix
9	chr1:153698800-153699800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr1:153699000-153700000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:153699200-153699600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:153699200-153699800	Enhancers	Adipose Nuclei	Adipose

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