The 2.0 version of rSNPBase

Variant report

Variant rs6663988
Chromosome Location chr1:153709971-153709972
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:153701200-153716200 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr1:153701400-153712400 Weak transcription Ovary ovary
3 chr1:153701600-153712800 Weak transcription Placenta Amnion Placenta Amnion
4 chr1:153701800-153711400 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr1:153701800-153712800 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr1:153701800-153713000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr1:153701800-153713200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
8 chr1:153702000-153711600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr1:153702000-153712800 Weak transcription H9 Cell Line embryonic stem cell
10 chr1:153702000-153712800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
11 chr1:153702000-153713000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
12 chr1:153702000-153713000 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr1:153702000-153713000 Weak transcription HSMM muscle
14 chr1:153702000-153713000 Weak transcription NH-A brain
15 chr1:153702000-153713000 Weak transcription NHEK skin
16 chr1:153702000-153713200 Weak transcription Gastric stomach
17 chr1:153702000-153713200 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr1:153702000-153713800 Weak transcription Esophagus oesophagus
19 chr1:153702200-153711800 Weak transcription Lung lung
20 chr1:153702200-153713000 Weak transcription Left Ventricle heart
21 chr1:153702400-153712800 Weak transcription Brain Substantia Nigra brain
22 chr1:153702400-153713200 Weak transcription Colonic Mucosa Colon
23 chr1:153702600-153712600 Weak transcription Fetal Thymus thymus
24 chr1:153702600-153712800 Weak transcription Fetal Brain Female brain
25 chr1:153702600-153713000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
26 chr1:153702600-153713000 Weak transcription Pancreas Pancrea
27 chr1:153702600-153713000 Weak transcription HMEC breast
28 chr1:153702600-153713000 Weak transcription HSMMtube muscle
29 chr1:153702600-153713800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
30 chr1:153702600-153714000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
31 chr1:153702800-153710000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
32 chr1:153702800-153711400 Weak transcription H1 Cell Line embryonic stem cell
33 chr1:153702800-153712600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr1:153702800-153712800 Weak transcription Brain Inferior Temporal Lobe brain
35 chr1:153702800-153712800 Weak transcription NHLF lung
36 chr1:153702800-153713000 Weak transcription Primary T helper naive cells fromperipheralblood blood
37 chr1:153702800-153713000 Weak transcription Primary T killer memory cells from peripheral blood blood
38 chr1:153703000-153713000 Weak transcription Primary T regulatory cells fromperipheralblood blood
39 chr1:153703000-153713800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
40 chr1:153703000-153715800 Weak transcription Psoas Muscle Psoas
41 chr1:153703200-153712800 Weak transcription HUES64 Cell Line embryonic stem cell
42 chr1:153703200-153712800 Weak transcription Brain Germinal Matrix brain
43 chr1:153703200-153712800 Weak transcription Skeletal Muscle Female skeletal muscle
44 chr1:153703200-153713000 Weak transcription Primary T killer naive cells fromperipheralblood blood
45 chr1:153703200-153713000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
46 chr1:153703200-153713200 Weak transcription HUVEC blood vessel
47 chr1:153703400-153713000 Weak transcription Brain Cingulate Gyrus brain
48 chr1:153703600-153713000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr1:153703600-153713000 Weak transcription Primary T helper naive cells from peripheral blood blood
50 chr1:153703600-153713000 Weak transcription Primary T helper cells PMA-I stimulated --

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Last update: Aug 31, 2015