Variant report

Variant	rs61832872
Chromosome Location	chr10:5861005-5861006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:24)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:24 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr10:5860908-5861060	K562	blood:	n/a	n/a
2	YY1	chr10:5860811-5861094	GM12892	blood:	n/a	n/a
3	SPI1	chr10:5861001-5861162	GM12878	blood:	n/a	n/a
4	SPI1	chr10:5860918-5861251	GM12891	blood:	n/a	n/a
5	PAX5	chr10:5860895-5861166	GM12891	blood:	n/a	n/a
6	NFATC1	chr10:5860828-5861265	GM12878	blood:	n/a	n/a
7	RUNX3	chr10:5860632-5861224	GM12878	blood:	n/a	n/a
8	MXI1	chr10:5860931-5861131	GM12878	blood:	n/a	n/a
9	USF2	chr10:5860870-5861149	GM12878	blood:	n/a	n/a
10	CUX1	chr10:5860985-5861152	GM12878	blood:	n/a	n/a
11	SPI1	chr10:5860868-5861215	GM12891	blood:	n/a	n/a
12	USF1	chr10:5860899-5861059	GM12878	blood:	n/a	n/a
13	RUNX3	chr10:5860621-5861260	GM12878	blood:	n/a	n/a
14	YY1	chr10:5860869-5861130	GM12892	blood:	n/a	n/a
15	MAX	chr10:5860841-5861175	GM12878	blood:	n/a	n/a
16	MAX	chr10:5860849-5861116	K562	blood:	n/a	n/a
17	TCF3	chr10:5860875-5861184	GM12878	blood:	n/a	n/a
18	YY1	chr10:5860787-5861183	GM12878	blood:	n/a	n/a
19	MTA3	chr10:5860841-5861349	GM12878	blood:	n/a	n/a
20	ZNF143	chr10:5860876-5861085	GM12878	blood:	n/a	n/a
21	YY1	chr10:5860824-5861216	GM12878	blood:	n/a	n/a
22	SPI1	chr10:5860948-5861258	GM12878	blood:	n/a	n/a
23	PAX5	chr10:5860852-5861209	GM12878	blood:	n/a	n/a
24	STAT5A	chr10:5860821-5861184	GM12878	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:5860095..5862542-chr10:5886681..5888594,2	MCF-7	breast:
2	chr10:5857210..5863651-chr10:5869000..5872361,6	MCF-7	breast:
3	chr10:5858242..5861090-chr10:5872989..5875709,2	MCF-7	breast:
4	chr10:5852595..5861125-chr10:5921136..5936216,31	MCF-7	breast:

No data

Variant related genes	Relation type
GDI2	TF binding region
ENSG00000134452	Chromatin interaction
ENSG00000134461	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1057943	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11592993	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11593876	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11594505	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11594846	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11595421	0.95[EUR][1000 genomes]
rs11596702	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11599810	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2386620	0.82[EUR][1000 genomes]
rs2386664	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2797484	0.80[EUR][1000 genomes]
rs3736460	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45549643	0.95[EUR][1000 genomes]
rs59758327	0.89[EUR][1000 genomes]
rs61832759	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61832860	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61832863	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61832864	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61832865	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61832866	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61832870	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832878	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61836362	0.81[EUR][1000 genomes]
rs7076584	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7093027	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72772369	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72774084	0.96[EUR][1000 genomes]
rs7475869	0.93[EUR][1000 genomes]
rs7902987	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv831775	chr10:5804335-6000849	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv515935	chr10:5820394-5869839	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv549896	chr10:5820394-5880066	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5856200-5862600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:5856600-5861600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:5857000-5862200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:5857000-5863600	Enhancers	Primary B cells from cord blood	blood
5	chr10:5857000-5864200	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:5857000-5866800	Weak transcription	NHLF	lung
7	chr10:5857400-5871400	Weak transcription	Pancreas	Pancrea
8	chr10:5858400-5861600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:5859800-5862400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:5859800-5862800	Enhancers	GM12878-XiMat	blood
11	chr10:5860400-5861400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr10:5861000-5861200	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr10:5861000-5863000	Enhancers	HepG2	liver

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