Variant report

Variant	rs72772369
Chromosome Location	chr10:5824640-5824641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:5824368..5825931-chr10:5853511..5855472,2	MCF-7	breast:
2	chr10:5822061..5824683-chr10:5847855..5850406,3	K562	blood:

Variant related genes	Relation type
ENSG00000057608	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1057943	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11592993	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11593876	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11594505	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11594846	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595421	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11596702	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11599810	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2386620	0.83[EUR][1000 genomes]
rs2386664	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2797484	0.81[EUR][1000 genomes]
rs3736460	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs45549643	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56352451	0.84[EUR][1000 genomes]
rs59758327	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61832759	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61832860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832863	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832864	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61832865	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832866	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832870	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61832872	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61832874	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61832878	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61836362	0.87[EUR][1000 genomes]
rs7076584	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7093027	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72774084	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7475869	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7902987	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
5	nsv831775	chr10:5804335-6000849	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv947730	chr10:5817688-5827238	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv515935	chr10:5820394-5869839	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
8	nsv549896	chr10:5820394-5880066	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5762600-5843400	Strong transcription	Dnd41	blood
2	chr10:5762800-5843000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:5768000-5849400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:5797400-5847400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:5798000-5842800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:5798200-5843000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr10:5798600-5842800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:5805000-5843200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:5808400-5826400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:5808800-5825800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr10:5810400-5824800	Weak transcription	Ovary	ovary
12	chr10:5817200-5831200	Weak transcription	Pancreas	Pancrea
13	chr10:5817800-5825000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:5817800-5826200	Weak transcription	HMEC	breast
15	chr10:5818000-5826400	Weak transcription	Esophagus	oesophagus
16	chr10:5818000-5854200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:5818200-5824800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr10:5818400-5826200	Weak transcription	Hela-S3	cervix
19	chr10:5818400-5826400	Weak transcription	Aorta	Aorta
20	chr10:5818400-5826400	Weak transcription	Spleen	Spleen
21	chr10:5818400-5842800	Strong transcription	Duodenum Mucosa	Duodenum
22	chr10:5818800-5825400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr10:5818800-5825600	Weak transcription	Brain Angular Gyrus	brain
24	chr10:5818800-5826400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr10:5818800-5827400	Weak transcription	Stomach Mucosa	stomach
26	chr10:5818800-5842600	Strong transcription	Fetal Thymus	thymus
27	chr10:5819000-5825400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:5819200-5824800	Weak transcription	Colon Smooth Muscle	Colon
29	chr10:5819200-5825400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr10:5819400-5824800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr10:5819400-5825000	Weak transcription	NHLF	lung
32	chr10:5819400-5826400	Weak transcription	Psoas Muscle	Psoas
33	chr10:5819400-5826400	Weak transcription	Small Intestine	intestine
34	chr10:5819600-5825400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr10:5819600-5844000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:5820200-5833400	Strong transcription	HepG2	liver
37	chr10:5820200-5840400	Strong transcription	HSMM	muscle
38	chr10:5820200-5842800	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr10:5820400-5843000	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr10:5820400-5843000	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr10:5820600-5842800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:5821000-5825000	Strong transcription	Fetal Intestine Small	intestine
43	chr10:5821200-5832000	Strong transcription	Liver	Liver
44	chr10:5821600-5825000	Strong transcription	Fetal Stomach	stomach
45	chr10:5821600-5826200	Strong transcription	Primary B cells from cord blood	blood
46	chr10:5821800-5826400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr10:5821800-5829400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:5821800-5838800	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr10:5822000-5828800	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr10:5822000-5829400	Strong transcription	Osteobl	bone

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