Variant report

Variant	rs7475869
Chromosome Location	chr10:5776884-5776885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:5769091..5771316-chr10:5775254..5777400,2	K562	blood:
2	chr10:5771532..5773466-chr10:5775122..5777230,2	MCF-7	breast:
3	chr10:5772075..5775852-chr10:5776811..5780345,4	K562	blood:
4	chr10:5767552..5769962-chr10:5775840..5778685,2	MCF-7	breast:
5	chr10:5775152..5778135-chr10:5781961..5783823,3	K562	blood:
6	chr10:5732189..5734942-chr10:5774754..5777305,2	K562	blood:
7	chr10:5726697..5728332-chr10:5775700..5777621,2	K562	blood:

Variant related genes	Relation type
ENSG00000108021	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1057943	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11592993	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11593876	0.95[EUR][1000 genomes]
rs11594505	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11594846	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11595421	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11596702	0.91[EUR][1000 genomes]
rs11596832	0.97[ASN][1000 genomes]
rs11599810	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2386620	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2386664	0.83[EUR][1000 genomes]
rs2797484	0.81[EUR][1000 genomes]
rs3736460	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs45549643	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59758327	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61832759	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61832860	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61832863	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs61832864	0.83[EUR][1000 genomes]
rs61832865	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs61832866	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs61832870	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs61832872	0.93[EUR][1000 genomes]
rs61832874	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs61832878	0.80[EUR][1000 genomes]
rs61836362	0.82[EUR][1000 genomes]
rs7076584	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7093027	0.83[EUR][1000 genomes]
rs72772369	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72774084	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902987	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	esv2759729	chr10:5557024-5804780	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2758209	chr10:5637111-5804780	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv1050663	chr10:5737979-5785918	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5753800-5783400	Weak transcription	Brain Substantia Nigra	brain
2	chr10:5753800-5787000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:5754400-5781600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr10:5762200-5783000	Weak transcription	Stomach Mucosa	stomach
5	chr10:5762200-5795400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr10:5762400-5794600	Strong transcription	Primary T helper cells PMA-I stimulated	--
7	chr10:5762600-5843400	Strong transcription	Dnd41	blood
8	chr10:5762800-5778000	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:5762800-5778000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:5762800-5779800	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr10:5762800-5793000	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr10:5762800-5843000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:5763000-5795000	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr10:5763200-5778800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:5763200-5779000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:5763400-5788600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr10:5766600-5777400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:5767200-5792800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr10:5768000-5788400	Weak transcription	Fetal Brain Male	brain
20	chr10:5768000-5849400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr10:5768400-5778000	Strong transcription	Primary B cells from peripheral blood	blood
22	chr10:5768600-5786400	Strong transcription	GM12878-XiMat	blood
23	chr10:5768800-5777400	Strong transcription	Fetal Muscle Leg	muscle
24	chr10:5768800-5778200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr10:5769400-5784200	Weak transcription	Psoas Muscle	Psoas
26	chr10:5769600-5781600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr10:5771200-5778600	Strong transcription	Fetal Intestine Large	intestine
28	chr10:5771400-5777600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:5771600-5777800	Strong transcription	Primary B cells from cord blood	blood
30	chr10:5771800-5779600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr10:5771800-5790000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:5772200-5778200	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:5772200-5779600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr10:5773000-5788400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:5773400-5781400	Weak transcription	HSMMtube	muscle
36	chr10:5773400-5781800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr10:5773600-5784200	Weak transcription	Small Intestine	intestine
38	chr10:5773600-5786000	Weak transcription	Right Ventricle	heart
39	chr10:5773800-5781600	Weak transcription	Aorta	Aorta
40	chr10:5773800-5781600	Weak transcription	Colonic Mucosa	Colon
41	chr10:5773800-5781600	Weak transcription	Ovary	ovary
42	chr10:5773800-5781600	Weak transcription	HUVEC	blood vessel
43	chr10:5773800-5781800	Weak transcription	Brain Angular Gyrus	brain
44	chr10:5773800-5785800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr10:5773800-5788200	Weak transcription	Fetal Kidney	kidney
46	chr10:5774000-5781800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr10:5774000-5781800	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr10:5774000-5781800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:5774000-5781800	Weak transcription	Colon Smooth Muscle	Colon
50	chr10:5774000-5788200	Weak transcription	Gastric	stomach

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