Variant report

Variant	rs7076584
Chromosome Location	chr10:5839384-5839385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:5728149..5729932-chr10:5839231..5841919,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1057943	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11592993	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11593876	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11594505	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11594846	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595421	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11596702	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11599810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2386664	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3736460	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs45549643	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs59758327	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61832759	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61832860	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832864	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61832865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61832870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61832872	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61832874	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61832878	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7093027	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72772369	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72774084	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7475869	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7902987	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
5	nsv831775	chr10:5804335-6000849	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv515935	chr10:5820394-5869839	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv549896	chr10:5820394-5880066	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5762600-5843400	Strong transcription	Dnd41	blood
2	chr10:5762800-5843000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:5768000-5849400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:5797400-5847400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:5798000-5842800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:5798200-5843000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr10:5798600-5842800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:5805000-5843200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:5818000-5854200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:5818400-5842800	Strong transcription	Duodenum Mucosa	Duodenum
11	chr10:5818800-5842600	Strong transcription	Fetal Thymus	thymus
12	chr10:5819600-5844000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:5820200-5840400	Strong transcription	HSMM	muscle
14	chr10:5820200-5842800	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:5820400-5843000	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr10:5820400-5843000	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr10:5820600-5842800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:5822000-5843800	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr10:5822200-5842600	Strong transcription	Primary B cells from peripheral blood	blood
20	chr10:5822200-5843400	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr10:5822400-5842600	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr10:5822400-5842800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr10:5822600-5842800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:5822600-5842800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:5823600-5842600	Strong transcription	Placenta	Placenta
26	chr10:5823800-5842600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr10:5823800-5842600	Strong transcription	Fetal Muscle Trunk	muscle
28	chr10:5823800-5843400	Strong transcription	Thymus	Thymus
29	chr10:5824000-5842600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:5824000-5842600	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr10:5824000-5843400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:5824200-5842800	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr10:5824200-5843400	Strong transcription	Fetal Intestine Large	intestine
34	chr10:5824600-5842800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr10:5824600-5843400	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr10:5825000-5842800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:5826400-5844400	Strong transcription	Fetal Intestine Small	intestine
38	chr10:5826400-5844400	Strong transcription	Fetal Stomach	stomach
39	chr10:5826600-5843400	Strong transcription	Primary B cells from cord blood	blood
40	chr10:5826800-5842400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr10:5826800-5842800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr10:5826800-5844400	Strong transcription	Fetal Muscle Leg	muscle
43	chr10:5827200-5842800	Strong transcription	GM12878-XiMat	blood
44	chr10:5827400-5842600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:5827400-5843000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr10:5827600-5842600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr10:5827600-5843800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr10:5827800-5848800	Weak transcription	Stomach Mucosa	stomach
49	chr10:5827800-5851200	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr10:5828200-5843000	Weak transcription	Right Atrium	heart

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