Variant report

Variant	rs61849515
Chromosome Location	chr10:26109407-26109408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:26109191-26110284	H1-neurons	neurons:	n/a	n/a
2	REST	chr10:26107255-26110438	H1-neurons	neurons:	n/a	chr10:26110023-26110041
3	POLR2A	chr10:26109192-26110336	H1-neurons	neurons:	n/a	n/a
4	REST	chr10:26109181-26110275	H1-neurons	neurons:	n/a	chr10:26110023-26110041

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26109191..26112168-chr10:26115636..26117848,2	K562	blood:

Variant related genes	Relation type
RNU6-632P	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11014762	0.88[EUR][1000 genomes]
rs11595132	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12251932	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16926362	0.88[EUR][1000 genomes]
rs17665040	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17737729	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2367981	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2367982	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4418705	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4498875	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749076	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4749077	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749078	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4749079	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55918230	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57510325	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57609789	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61849513	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61849518	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61849523	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7079884	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080778	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7084670	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs751006	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs751007	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26106200-26116400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26107000-26109800	Weak transcription	NH-A	brain
3	chr10:26107400-26117200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr10:26108000-26109600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:26108400-26109800	Weak transcription	Dnd41	blood
6	chr10:26108400-26110000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr10:26108400-26117200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr10:26108400-26117200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr10:26108400-26117600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr10:26109400-26109800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr10:26109400-26109800	Weak transcription	Brain Germinal Matrix	brain
12	chr10:26109400-26110400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:26109400-26110400	Enhancers	Primary B cells from peripheral blood	blood
14	chr10:26109400-26110400	Enhancers	Cortex derived primary cultured neurospheres	brain

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