Variant report

Variant	rs61849523
Chromosome Location	chr10:26138377-26138378
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10508706	0.87[AMR][1000 genomes]
rs10764586	0.81[AMR][1000 genomes]
rs10828893	0.88[AMR][1000 genomes]
rs11014762	0.81[EUR][1000 genomes]
rs11595132	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251932	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16926362	0.81[EUR][1000 genomes]
rs17665040	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17737729	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2367981	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2367982	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4418705	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4498875	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4749076	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4749077	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4749078	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749079	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55918230	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57510325	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57609789	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60257452	0.87[AMR][1000 genomes]
rs61849513	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61849515	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61849518	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073148	0.81[AMR][1000 genomes]
rs7079884	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7080778	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7084670	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7089832	0.82[AMR][1000 genomes]
rs751006	0.83[EUR][1000 genomes]
rs751007	0.82[EUR][1000 genomes]
rs9629914	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26138000-26141400	Enhancers	Brain Germinal Matrix	brain
2	chr10:26138000-26142200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:26138200-26138400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived

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