Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10508706	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10828887	0.98[ASN][1000 genomes]
rs10828892	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828893	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11014762	0.82[ASN][1000 genomes]
rs11014784	0.97[ASN][1000 genomes]
rs1123383	0.94[ASN][1000 genomes]
rs12251932	0.86[AMR][1000 genomes]
rs16926362	0.81[ASN][1000 genomes]
rs2255495	0.85[ASN][1000 genomes]
rs2437384	0.83[ASN][1000 genomes]
rs2437386	0.82[ASN][1000 genomes]
rs2437392	0.84[ASN][1000 genomes]
rs2437394	0.85[ASN][1000 genomes]
rs2437395	0.85[ASN][1000 genomes]
rs2437396	0.84[ASN][1000 genomes]
rs2505431	0.84[ASN][1000 genomes]
rs2505438	0.85[ASN][1000 genomes]
rs2505440	0.85[ASN][1000 genomes]
rs2917186	0.97[ASN][1000 genomes]
rs3006249	0.94[ASN][1000 genomes]
rs3006253	0.95[ASN][1000 genomes]
rs4749079	0.86[AMR][1000 genomes]
rs60257452	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61849523	0.81[AMR][1000 genomes]
rs7073148	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7089832	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs751006	0.84[ASN][1000 genomes]
rs751007	0.84[ASN][1000 genomes]
rs9629914	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26154800-26157000	Weak transcription	Brain Germinal Matrix	brain

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