Variant report

Variant	rs10828887
Chromosome Location	chr10:26143316-26143317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10764586	0.98[ASN][1000 genomes]
rs10828892	0.98[ASN][1000 genomes]
rs11014762	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs11014784	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1123383	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12251932	0.85[AFR][1000 genomes]
rs16926362	0.82[ASN][1000 genomes]
rs2255495	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2437384	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2437386	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2437392	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2437394	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2437395	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2437396	0.86[ASN][1000 genomes]
rs2505431	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2505438	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2505440	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2917186	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3006249	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3006253	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7073148	0.94[ASN][1000 genomes]
rs7089832	0.94[ASN][1000 genomes]
rs751006	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs751007	1.00[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3411313	chr10:26139815-26143622	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3482285	chr10:26139862-26143599	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3323523	chr10:26139880-26143583	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3482396	chr10:26139901-26143556	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3482507	chr10:26139901-26143556	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv11326	chr10:26139994-26143360	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26141400-26144000	Weak transcription	Brain Germinal Matrix	brain
2	chr10:26141600-26144400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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