Variant report

Variant	rs2437384
Chromosome Location	chr10:26104676-26104677
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr10:26104378-26104949	U2OS	brain:	n/a	n/a
2	REST	chr10:26104611-26107014	H1-neurons	neurons:	n/a	chr10:26106907-26106925
3	KAP1	chr10:26104266-26106052	HEK293	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26104636..26107048-chr17:79824825..79827095,2	MCF-7	breast:

Variant related genes	Relation type
RNA5SP306	TF binding region
ENSG00000141522	Chromatin interaction
ENSG00000262413	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10764586	0.83[ASN][1000 genomes]
rs10828887	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10828892	0.83[ASN][1000 genomes]
rs11014762	0.94[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs11014763	0.88[CHB][hapmap]
rs11014784	0.85[ASN][1000 genomes]
rs1123383	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16926362	0.97[ASN][1000 genomes]
rs17812660	0.89[CHB][hapmap]
rs2255495	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2437386	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2437388	0.87[CHB][hapmap]
rs2437392	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2437394	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2437395	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2437396	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2505431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2505438	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2505440	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2917186	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3006249	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3006253	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7073148	0.82[ASN][1000 genomes]
rs7089832	0.82[ASN][1000 genomes]
rs751006	0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs751007	0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26088200-26106600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:26102200-26105000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:26103800-26108400	Enhancers	Dnd41	blood
4	chr10:26104000-26105000	Enhancers	NH-A	brain
5	chr10:26104200-26106200	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr10:26104400-26105200	Enhancers	Thymus	Thymus
7	chr10:26104400-26105400	Enhancers	Brain Germinal Matrix	brain
8	chr10:26104600-26107200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr10:26104600-26108000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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